View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16080_low_5 (Length: 368)
Name: NF16080_low_5
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16080_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 48695316 - 48695683
Alignment:
| Q |
1 |
taacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatcatcacccttatcttcg |
100 |
Q |
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| T |
48695316 |
taacaacagcagagctgatgatgaaggaaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatcatcacccttatcttcg |
48695415 |
T |
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| Q |
101 |
gcggaagggagattaaagtcattaaagaggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccacttctactgtccaacaac |
200 |
Q |
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| T |
48695416 |
gcggaagggagattaaagtcattaaagaggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccacttctactgtccaacaac |
48695515 |
T |
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| Q |
201 |
aaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcattcattattatactttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695516 |
aaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcattcattattatactttt |
48695615 |
T |
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| Q |
301 |
taagtacatatatagatgtacatgtaggtatgttaatgtaagcccgcccaaactgaggcagcagcaat |
368 |
Q |
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| T |
48695616 |
taagtacatatatagatgtacatgtaggtatgttaatgtaagcccgcccaaactgaggcagcagcaat |
48695683 |
T |
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