View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16080_low_7 (Length: 290)
Name: NF16080_low_7
Description: NF16080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16080_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 29460846 - 29460571
Alignment:
| Q |
1 |
tcccaccttcattgttactcgtgccaaggatgtcctccatgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatat |
100 |
Q |
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| T |
29460846 |
tcccaccttcattgttactcgtgccaaagatgtcctccatgataaagtgtaacgtcaacgcagctaccttccacaacaactcaatcatgggatacaatat |
29460747 |
T |
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| Q |
101 |
gtgcattagagactcattggggttgattcgttaaatcaaacatgttggatttctccgtcacgatactaaaagcataatccattggtttactggaaagtag |
200 |
Q |
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| T |
29460746 |
gtgctttagagactcattggggttgattcgttaaatcaaacatgttggatttctccgtcacgatactaaaagcataatccattggtttactagaaagtag |
29460647 |
T |
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| Q |
201 |
aatctatctaaataggaacatcaaatggattgcacaacatttgccttgaaacggactgtaagtctttagttgatgc |
276 |
Q |
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| T |
29460646 |
aatctatctaaataggaacatcaaatggattgcacaacatttgctttgaaacggactgtaagtctttagttgatgc |
29460571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 43969743 - 43969798
Alignment:
| Q |
60 |
gcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
115 |
Q |
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| T |
43969743 |
gcagctaccttcaacaacaactctatcatgggatacaacatgtgctttagagactc |
43969798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 13021320 - 13021245
Alignment:
| Q |
40 |
tgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
115 |
Q |
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| T |
13021320 |
tgataaagtgtaacgtcgatgcagctaccttcaacgacaactctatcatgggatacggtatgtgctttagagactc |
13021245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 13092844 - 13092769
Alignment:
| Q |
40 |
tgataaagtgtaacttcaacgcagctaccttctacaacaactcaatcatgggatacaatatgtgcattagagactc |
115 |
Q |
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| T |
13092844 |
tgataaagtgtaacgtcgatgcagctaccttcaacgacaactctatcatgggatacggtatgtgctttagagactc |
13092769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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