View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16080_low_9 (Length: 217)

Name: NF16080_low_9

Description: NF16080

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16080_low_9

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 180; E-Value: 2e-97

Query Start/End: Original strand, 15 - 202

Target Start/End: Original strand, 5979130 - 5979317

Alignment:

Q	15	aatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgttgaaga	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5979130	aatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgttgaaga	5979229	T

Q	115	gaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtatatatatgt	202	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5979230	gaaagtgtggctctgataattttggcaatggaaagtgtggtagttcatctagccaatgtcattgttcaaagaagaggtatatatatgt	5979317	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 108 - 194

Target Start/End: Complemental strand, 39256104 - 39256018

Alignment:

Q	108	ttgaagagaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtat	194	Q
		\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|
T	39256104	ttgaaaaggaagtgtagctctgaaactttgggttctggaaagtgtggtagttcttctagccgttgtcattgttccaaaaaaaggtat	39256018	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]