View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16081_high_5 (Length: 256)
Name: NF16081_high_5
Description: NF16081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16081_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 38984186 - 38983963
Alignment:
| Q |
19 |
aaacttgtcacttgttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaactatgttattcttgtctgaaaacacagtattcaag |
118 |
Q |
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| T |
38984186 |
aaacttgtcacttgttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaagtatgttattcttgtctgaaaacacagtattcaag |
38984087 |
T |
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| Q |
119 |
gccatgtttggagctatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacaccagcaggctccaagatagcatgctgca |
218 |
Q |
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| T |
38984086 |
gccacgtttggagctatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacatcagcaggctccaagatagcatgctgca |
38983987 |
T |
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| Q |
219 |
tatcataggagctgttacttagtc |
242 |
Q |
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| T |
38983986 |
tatcataggagctgttacttagtc |
38983963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 50249849 - 50250018
Alignment:
| Q |
22 |
cttgtcacttgttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaactatgttattcttgtctgaaaacacagtattcaaggcc |
121 |
Q |
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| T |
50249849 |
cttgtcatttgttaaagaagtgtaagcagtagtgataggttgtggcatgagatgctgcccacttatgttattcttgtctgatatcccaggattcaaggcc |
50249948 |
T |
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| Q |
122 |
atgtttggagctatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacac |
191 |
Q |
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| T |
50249949 |
atctttggagctatgatcaagctagcatccaaagagtgagtaacacatgcactcacacttctagccacac |
50250018 |
T |
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