View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16082_low_1 (Length: 359)

Name: NF16082_low_1
Description: NF16082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16082_low_1
NF16082_low_1
[»] chr8 (2 HSPs)
chr8 (81-351)||(2558807-2559077)
chr8 (18-85)||(2559130-2559197)
[»] chr4 (5 HSPs)
chr4 (129-221)||(25642261-25642353)
chr4 (129-198)||(18997671-18997740)
chr4 (136-234)||(10169172-10169270)
chr4 (136-189)||(29277840-29277893)
chr4 (208-244)||(5334873-5334909)
[»] chr2 (1 HSPs)
chr2 (132-198)||(35246872-35246938)
[»] chr1 (1 HSPs)
chr1 (190-243)||(34049411-34049464)
[»] chr7 (1 HSPs)
chr7 (267-349)||(21602398-21602479)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 81 - 351
Target Start/End: Complemental strand, 2559077 - 2558807
Alignment:
Q  81 ctgtcgtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat 180  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2559077 ctgtagtaggtgtagtgtaagtgatgaaacaaagatcagagagaacgtattaagctttgttaactatttgtctaatgaccttccttaatcgattatatat 2558978  T
Q  181 ttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacgacatgaaattcattttacctgtcgacttccgttgctga 280  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||    
T  2558977 tccttctatttcaattattacttcacttatccctcatcatatgtttccatgtctggaaaacgacatgaaattcattttacctgtcgacttccgatgttga 2558878  T
Q  281 gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2558877 gcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatgct 2558807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2559197 - 2559130
Alignment:
Q  18 aagtatgccggttttataaaaaataaaacatcaaatctaacgagacacgtgcaataccataacctgtc 85  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2559197 aagtatgccggttttatcaaaaataaaacatcaaatctaacgagacacatgcaataccataacctgtc 2559130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 25642353 - 25642261
Alignment:
Q  129 attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcata 221  Q
    ||||||| |||| |||||||||||||||  | ||||||||||||||||||  | ||| ||||||||||||||||  || ||||||||| ||||    
T  25642353 attaagccttgtgaactatttgtctaatatcattccttaatcgattatatcctccttttatttcaattattactcaacatatccctcaacata 25642261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 18997740 - 18997671
Alignment:
Q  129 attaagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat 198  Q
    |||||||||  | |||||||||||||||  ||||||| ||||||||||||| | ||| ||||||||||||    
T  18997740 attaagcttcatgaactatttgtctaatatccttcctgaatcgattatatactccttttatttcaattat 18997671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 10169270 - 10169172
Alignment:
Q  136 tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattattacttcacttatccctcatcatatgtttccatgtct 234  Q
    |||| |||||| | ||||||||||||||||  ||| |||||||| | || |||||||||||||| |||||  | ||||| ||  ||||||| |||||||    
T  10169270 tttgataactaatcgtctaatgaccttcctagatcaattatatactcctcctatttcaattattccttcaactgtcccttattgtatgttttcatgtct 10169172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 29277840 - 29277893
Alignment:
Q  136 tttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctat 189  Q
    ||||||||||| || ||||||| |||||||||||||| |||||| ||| |||||    
T  29277840 tttgttaactaattatctaatgcccttccttaatcgagtatatacttcatctat 29277893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 5334873 - 5334909
Alignment:
Q  208 tatccctcatcatatgtttccatgtctagaaaacgac 244  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  5334873 tatccctcattatacgtttccatgtctagaaaacgac 5334909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 35246938 - 35246872
Alignment:
Q  132 aagctttgttaactatttgtctaatgaccttccttaatcgattatatatttcttctatttcaattat 198  Q
    |||||| |||||||| || | ||||  |||||||||||||||||||||||||| |||||||| ||||    
T  35246938 aagcttcgttaactaattatttaatttccttccttaatcgattatatatttctcctatttcagttat 35246872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 34049464 - 34049411
Alignment:
Q  190 ttcaattattacttcacttatccctcatcatatgtttccatgtctagaaaacga 243  Q
    ||||| ||| || |||||||||||||||| ||||||||||||||||| ||||||    
T  34049464 ttcaaatataacctcacttatccctcatcgtatgtttccatgtctagtaaacga 34049411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 21602398 - 21602479
Alignment:
Q  267 acttccgttgctgagcaaaatagacaattgattcaatgacatataaccgaatagttgaatataaatgcaaaccagaccctatg 349  Q
    ||||||||||||||||||||||||  |||||||| ||| ||||| |||| ||| || ||||| | ||||||||  ||||||||    
T  21602398 acttccgttgctgagcaaaatagattattgattccatggcatatgaccggataatt-aatatgattgcaaacctaaccctatg 21602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University