View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_high_3 (Length: 446)
Name: NF16083_high_3
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 29562343 - 29561926
Alignment:
| Q |
18 |
agtagttctgcttcaacttccaagagagttgaatttcaagtacctcatcaggtacattcttgatttcattgccactagattgtagattattgttaataat |
117 |
Q |
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| T |
29562343 |
agtagttctgcttcaacttccaagagagttgaatttcaagtacctcatcaggtacattcttgatttcattgccactagattgtagattattgttaataat |
29562244 |
T |
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| Q |
118 |
tagtctttttatcatataaactacaataatccaattaaatacgactttaataatcccaccattaataaaaaattatgaacgtgaaatgatttgaatttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
29562243 |
tagtctttttatcatataaactacaataatccaattaaatacgactttaataatcccaccattaataaaaaattatgaaggtgaattgatttgaatttct |
29562144 |
T |
|
| Q |
218 |
tagtgtatcttttaagagattaattttaatgcagtgttattataaatttacactgacaatctcatgacctaagatgacactgacaatcttggctaaccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29562143 |
tagtgtatcttttaagagattaattttaatgcagtgttattataaatttacactgacaatctcatgacctaagatgacactgacaatcttggctaaccga |
29562044 |
T |
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| Q |
318 |
attaaaagaacgaattcaattcttaaatcaaattgtatattgacaaatcatgcaggaaaatttgtcatgtgaagcaaacctgtgttcaggacattgcaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29562043 |
attaaaagaacgaattcaattcttaaatcaaattgtatattgacaaatcatgcaggaaaatttgtcatgtgaagcaaacctgtgttcaggacattgcaag |
29561944 |
T |
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| Q |
418 |
actattgtaagaagaata |
435 |
Q |
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|||||||||||||||||| |
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| T |
29561943 |
actattgtaagaagaata |
29561926 |
T |
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