View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16083_high_6 (Length: 254)

Name: NF16083_high_6
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16083_high_6
NF16083_high_6
[»] chr7 (12 HSPs)
chr7 (17-244)||(1698069-1698296)
chr7 (64-207)||(2124742-2124885)
chr7 (64-200)||(2137263-2137399)
chr7 (64-207)||(2097372-2097515)
chr7 (64-207)||(2103669-2103812)
chr7 (20-207)||(2134139-2134326)
chr7 (64-207)||(2064560-2064703)
chr7 (20-207)||(2071668-2071855)
chr7 (64-207)||(2693176-2693319)
chr7 (64-185)||(2246989-2247110)
chr7 (68-140)||(2055337-2055409)
chr7 (20-140)||(2121417-2121537)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 1698069 - 1698296
Alignment:
Q  17 ctttcaacaatctgtcagggaagattcctcgacagttaacacaccttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctatacc 116  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1698069 ctttcaacaatctgtcggggaagattcctcaacagttaacacaccttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctatacc 1698168  T
Q  117 gcagaatcagcagttctctacatttcaagataattcatttgaaggcaaccaaggcttgtgtggggatcaactgtcgaagaagtgcatagatgatcacgca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1698169 gcagaatcagcagttctctacatttcaagataattcatttgaaggcaaccaaggcttgtgtggggatcaactgtcgaagaagtgcatagatgatcacgca 1698268  T
Q  217 gggctttctttttcaccaccttctgcct 244  Q
    ||||||||||||||||||||||||||||    
T  1698269 gggctttctttttcaccaccttctgcct 1698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 2124885 - 2124742
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||||| | | ||||||||||| ||||||||| ||||||||||||| || ||| | ||||| ||||||||  ||||| |||||||||| || |    
T  2124885 acctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaaaataatcagttttctacattcaaagatgattcatttgagggta 2124786  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
    ||||||| |||| |||||||||  ||| ||||||||| ||||||    
T  2124785 accaaggtttgtatggggatcagttgttgaagaagtgtatagat 2124742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 2137399 - 2137263
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    |||||||||| |||| | ||||||||||| ||||||||| ||||||||||||| || ||| | ||||| ||||||||  ||  | |||||||||| || |    
T  2137399 acctttttggcgttcttaaatgtgtcctttaacaatctcacaggtcctataccacaaaataatcagttttctacattcaaaagtgattcatttgagggta 2137300  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtg 200  Q
    ||||||| |||||||||||||| |||| |||||||||    
T  2137299 accaaggattgtgtggggatcagctgttgaagaagtg 2137263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 2097515 - 2097372
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||||| | | ||||||||||| ||||||||| ||||||||||||| || ||| | ||||| || |||||  ||||| |||||||||| || |    
T  2097515 acctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaaaataatcagttttccacattcaaagatgattcatttgagggta 2097416  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
    |||||||  |||||||||||||| ||  ||||||||| ||||||    
T  2097415 accaaggtctgtgtggggatcaattggtgaagaagtgtatagat 2097372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 2103812 - 2103669
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||||| | | ||||||||||| ||||||||| ||||||||||||| || ||| | ||||| ||||||||  ||| | |||||||||| || |    
T  2103812 acctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaaaataatcagttttctacattcaaaggtgattcatttgagggta 2103713  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
    |||||||  ||||||||||||| ||||  |||||||| ||||||    
T  2103712 accaaggtctgtgtggggatcagctgttaaagaagtgtatagat 2103669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 2134326 - 2134139
Alignment:
Q  20 tcaacaatctgtcagggaagattcctcgacagttaacacaccttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgca 119  Q
    |||||| ||| |||||||| ||||| | ||||||  ||||  ||||||||||| ||||| | ||| ||||||| ||||||||| ||||||||||||| ||    
T  2134326 tcaacagtctttcagggaaaattccccaacagttggcacaaattacctttttgcagttcttaaatttgtcctttaacaatctcacaggtcctataccaca 2134227  T
Q  120 gaatcagcagttctctacatttcaagataattcatttgaaggcaaccaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
     ||| | ||||| ||||| ||  ||| | |||||||||| || || |||||  |||||||||||||  ||| ||||||||| ||||||    
T  2134226 aaataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagat 2134139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 2064703 - 2064560
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||||||| | |||||||| || ||||||||| ||||||||||||| || ||| | ||||| ||||||||  ||| | |||||||||| || |    
T  2064703 acctttttggagttcttaaatgtgtcatttaacaatctcacaggtcctataccacaaaataatcagttttctacattcaaaggtgattcatttgagggta 2064604  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
    | |||||  |||||||||||||  |||  |||||||| ||||||    
T  2064603 atcaaggtctgtgtggggatcagttgttaaagaagtgtatagat 2064560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 2071855 - 2071668
Alignment:
Q  20 tcaacaatctgtcagggaagattcctcgacagttaacacaccttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgca 119  Q
    |||||| ||| |||||||| ||||| | ||||||  ||||  | ||||||||||| ||| | ||||||||||| ||||||||| | ||||| ||||| ||    
T  2071855 tcaacagtctttcagggaaaattccccaacagttggcacaaatcacctttttggaattcttaaatgtgtcctttaacaatctcacgggtccaataccaca 2071756  T
Q  120 gaatcagcagttctctacatttcaagataattcatttgaaggcaaccaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
     ||| | ||||| ||||| ||  ||| | |||||||||| || |||||||| ||||||||||||||  ||  ||||||||| ||||||    
T  2071755 aaataatcagttttctacgttcaaaggtgattcatttgagggtaaccaaggtttgtgtggggatcagttggtgaagaagtgtatagat 2071668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 2693176 - 2693319
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||||| | | ||||||||||| || || |||  |||||||||||| || ||| | ||||| ||||||||  ||| | |||||||||| || |    
T  2693176 acctttttggagtacttaaatgtgtcctttaataaactcagaggtcctataccacaaaataatcagttttctacattcaaaggtgattcatttgagggta 2693275  T
Q  164 accaaggcttgtgtggggatcaactgtcgaagaagtgcatagat 207  Q
    |||||||  ||||||||||||| ||||  |||||||| ||||||    
T  2693276 accaaggtctgtgtggggatcagctgttaaagaagtgtatagat 2693319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 2246989 - 2247110
Alignment:
Q  64 acctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaaggca 163  Q
    ||||||||||| | | | |||||||| || ||||||||| |||||||||||||  |  || | ||||| ||||||||  ||| | |||||||||| || |    
T  2246989 acctttttggaatacttaaatgtgtcttttaacaatctcacaggtcctataccagaacataatcagttttctacattcaaaggtgattcatttgagggta 2247088  T
Q  164 accaaggcttgtgtggggatca 185  Q
    ||||||| ||||||||||||||    
T  2247089 accaaggtttgtgtggggatca 2247110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 2055409 - 2055337
Alignment:
Q  68 ttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatt 140  Q
    ||||||||||| | ||||||||||| |||||||||  |||||||||||| || ||| | ||||| ||||||||    
T  2055409 ttttggagttcttaaatgtgtcctttaacaatctcagaggtcctataccacaaaataatcagttttctacatt 2055337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 2121537 - 2121417
Alignment:
Q  20 tcaacaatctgtcagggaagattcctcgacagttaacacaccttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgca 119  Q
    |||||| ||| |||||||| ||||| | ||||||  ||||  | ||||||||||| | | | |||||||| || ||||||||  ||||||||||||| ||    
T  2121537 tcaacagtctttcagggaaaattccccaacagttggcacaaatcacctttttggaatacttaaatgtgtcatttaacaatcttacaggtcctataccaca 2121438  T
Q  120 gaatcagcagttctctacatt 140  Q
     ||| | ||||| ||||||||    
T  2121437 aaataatcagttttctacatt 2121417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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