View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16083_low_1 (Length: 786)
Name: NF16083_low_1
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_1 |
 | |
|
| [»] chr6 (13 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 232 - 786
Target Start/End: Complemental strand, 30510543 - 30509987
Alignment:
| Q |
232 |
gcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
330 |
Q |
| |
|
|||||||| |||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510543 |
gcgttgttttcgtatcttttacttccaatatggtctgttgttctaacaatgcaaatgatatccttcttaactatgatccaggcactgctagaggagttgg |
30510444 |
T |
|
| Q |
331 |
ttggcaaaagagcggtgcatatgtcaatctcgggtcatactaggtagttgggattccagcagcagttgtattagcttttgtattgcatgttggcgggaag |
430 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510443 |
ttggcaaaagatcggcgcatatgtcaatctcgggtcatactatttagttgggattccagcagcagttgtattagcttttgtattgcatgttggcgggaag |
30510344 |
T |
|
| Q |
431 |
gtaaataaatgttgtccatttattc-aaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtgg |
529 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510343 |
gtaaataaatgttgttcatttttttgaaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtgg |
30510244 |
T |
|
| Q |
530 |
ctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgtttt |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510243 |
ctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgtttt |
30510144 |
T |
|
| Q |
630 |
ctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaaga |
729 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510143 |
cttatcgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaaga |
30510044 |
T |
|
| Q |
730 |
aggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
786 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30510043 |
aggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
30509987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 230 - 786
Target Start/End: Original strand, 24709040 - 24709581
Alignment:
| Q |
230 |
tggcgttgttctcgtatcttttacttctaatccagtacgttgttcta-caatgcaaatgatatccttcttaactatgatccaggcactgctagaggagtt |
328 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
24709040 |
tggcgttgttttcgtatcttttacttctaatccagtttcttgttctaacaatgcaagtgatatccttgttaactacgatccaggcactgttagaggagtt |
24709139 |
T |
|
| Q |
329 |
ggttggcaaaagagcggtgcatatgtcaatctcgggtcatactaggtagttgggattccagcagcagttgtattagcttttgtattgcatgttggcggga |
428 |
Q |
| |
|
||| ||||||| | || |||||||||||||||||||| ||||| | || |||| ||||||||| |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
24709140 |
ggtaggcaaaatattggcgcatatgtcaatctcgggtcttactatttggtagggactccagcagccgttgtattagctttcgtattgcatattggtggga |
24709239 |
T |
|
| Q |
429 |
aggtaaataaatgttgtccatttattcaaaaaattgctaaatgctaacatatgatttggttcaacatgctaataataatacttataattcagggactgtg |
528 |
Q |
| |
|
||||||||||||||||||| || || ||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| ||||||| | |
|
|
| T |
24709240 |
aggtaaataaatgttgtccggtttttaaaaaaat-------tgctaacttatgatttggttcaacatgctaataataatatttctaatgtagggactata |
24709332 |
T |
|
| Q |
529 |
gctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggtgaataatttcttcatgttt |
628 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24709333 |
tctggggttcatatgtgcactcattgttcaagtattttctctaacaatcattacagtacgcactgattgggagaaagaggtgaaggatttcttcatgttt |
24709432 |
T |
|
| Q |
629 |
tctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttactttttctgattccttttattcaggcaaag |
728 |
Q |
| |
|
||| || ||||||||||| ||||||| |||| |||||| || |||||||| || ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
24709433 |
tctaaagattctctttcatccttttgatttatat-----tcatgtttt---tgatattgatatgcctttattttttctgatt-ttttttttcaggcaaag |
24709523 |
T |
|
| Q |
729 |
aaggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
786 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24709524 |
aaggctaccgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
24709581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 30511344 - 30511134
Alignment:
| Q |
16 |
atactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30511344 |
atactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttc |
30511245 |
T |
|
| Q |
116 |
tggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagagacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |||||||||| |
|
|
| T |
30511244 |
tggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttctt-tcttcatagagactgagtcaaaaacaacgatagagacaa |
30511146 |
T |
|
| Q |
216 |
atgggagcttct |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30511145 |
atgggagcttct |
30511134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 24708550 - 24708761
Alignment:
| Q |
16 |
atactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttc |
115 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24708550 |
atactaattcgcaatatattgggatacgcttatagcaatgaagaagaagttgtcaaatatgtagcaactatgttgcctattattgcagtatccaactttc |
24708649 |
T |
|
| Q |
116 |
tggatggaatacaaagtgttctttcaggtttctcttcttccctataacttttaatttcttgtcttcatagtggccgagtcaaaaacaatgatagagacat |
215 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
24708650 |
tggatggacttcaatgtgttctttcaggtttctcttattccaaataacgtttaatttattgtcttcatagtggccgattaaaaaacaatgatagagacat |
24708749 |
T |
|
| Q |
216 |
atgggagcttct |
227 |
Q |
| |
|
||||||| |||| |
|
|
| T |
24708750 |
atgggagtttct |
24708761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 300 - 786
Target Start/End: Complemental strand, 30482895 - 30482421
Alignment:
| Q |
300 |
actatgatccaggcactgctagaggagttggttggcaaaagagcggtgcatatgtcaatctcgggtcatactaggtagttgggattccagcagcagttgt |
399 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || | || |||| ||| ||||| || ||||| || || ||||||||||||| || ||||| |
|
|
| T |
30482895 |
actataattcaggcactgctagaggatgtggttggcagaaaattggcgcatttgttaatcttggatcatattatttaattgggattccagccgctgttgt |
30482796 |
T |
|
| Q |
400 |
attagcttttgtattgcatgttggcgggaaggtaaataaatgttgtccatttattcaaaaaattgctaaatgctaacatatgatttggttcaacatgcta |
499 |
Q |
| |
|
||| ||||||||| | ||| |||||||||||||||| | | | ||||||| |||| ||| | ||| | |||||||||||||||||| | ||| |
|
|
| T |
30482795 |
attcgcttttgtactacatattggcgggaaggtaaaaataaatggtccattctttcatgaaaat------tgcgatcatatgatttggttcaacctacta |
30482702 |
T |
|
| Q |
500 |
ataataatacttataattcagggactgtggctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattggg |
599 |
Q |
| |
|
|||| ||| ||||||| |||| ||||| ||||||| |||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
30482701 |
ataa--atatttataatgtaggggttgtggttggggattatatgtgccctcatcgttcaagcgctttgtctaatgatcattacaatacgcactgattggg |
30482604 |
T |
|
| Q |
600 |
agaaagaggtgaataatttcttcatgttttctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttctttac |
699 |
Q |
| |
|
||||||||||| || || ||||| |||| | | || | ||||||| ||| |||||||| |||| ||| ||| | | | || |||| ||||| |
|
|
| T |
30482603 |
agaaagaggtg---aagttattcat-ttttatttataatgtgtttcatcctttcattaaatatttatgtgatgcattctggggtgttaacatgactttat |
30482508 |
T |
|
| Q |
700 |
tttttctgattccttttattcaggcaaagaaggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
786 |
Q |
| |
|
|||||| |||| |||| |||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
30482507 |
tttttcctattcattttgttcaggcaaacaaggctactgatagagttcataatgcaataacaacagagagcttagtctcctgaagaa |
30482421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 300 - 783
Target Start/End: Complemental strand, 30501237 - 30500764
Alignment:
| Q |
300 |
actatgatccaggcactgctagaggagttggttggcaaaagagcggtgcatatgtcaatctcgggtcatactaggtagttgggattccagcagcagttgt |
399 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| || | | || | ||||||||| || |||||||| |||| || ||||||||||| ||||| |
|
|
| T |
30501237 |
actatgattcaggcactgctagaggatgtggttggcagaaaatttgcgcgtttgtcaatcttggatcatactatttagtcggaattccagcagctgttgt |
30501138 |
T |
|
| Q |
400 |
attagcttttgtattgcatgttggcgggaaggtaaataaatgttgtccatttattcaaaaaattgctaa-atgctaacatatgatttggttcaacatgct |
498 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| || ||||| | ||||| | |||||||||| || | ||||||||| | || || |||| |
|
|
| T |
30501137 |
attagcttttgtactgcatattggcgggaaggtgaa-aaatgat--ccattctctgcgaaaattgctatcatatt--catatgattggatttgacctgct |
30501043 |
T |
|
| Q |
499 |
aataataatacttataattcagggactgtggctggggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgg |
598 |
Q |
| |
|
||||| ||| ||||||| |||| |||||||||||||| |||||||| ||| | ||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30501042 |
aataa--atatttataatgtaggggctgtggctggggattatatgtgccctcattgttcacgtactttgtctaacgatcattacaatacgcactgattgg |
30500945 |
T |
|
| Q |
599 |
gagaaagaggtgaataatttcttcatgttttctgaacgatctctttcatcgttttgataaatattaatgtcatgtattgtaagatattgacatttcttta |
698 |
Q |
| |
|
|||||||||||| || |||||||| |||||| | ||| | ||| ||| ||| |||||||| ||| ||| ||||| | | ||||| ||||| |
|
|
| T |
30500944 |
gagaaagaggtg---aaattcttcat-ttttcttcatgatatgttttatcctttcactaaatattcatgcgatgcattgttgggtgctgacaagccttta |
30500849 |
T |
|
| Q |
699 |
ctttttctgattccttttattcaggcaaagaaggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaa |
783 |
Q |
| |
|
||||||| || |||| |||||||||||||||| ||| ||||||| ||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
30500848 |
ttttttctaatgtattttgttcaggcaaagaaggcaactcatagagtctataatgcaataacaacagagatcttagtctcatgaa |
30500764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 30501640 - 30501554
Alignment:
| Q |
19 |
ctaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagta |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| || |||||||| |
|
|
| T |
30501640 |
ctaattcgcaatatatggggatatgcttatagcaatgaagaagaagtggtcaaatatgtagcaaatatgatgccacttcttgcagta |
30501554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 30483681 - 30483551
Alignment:
| Q |
16 |
atactaattcgcaatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttc |
115 |
Q |
| |
|
|||||| |||| ||| ||||||| || ||||||||||||||||||||||| || || |||||||||| |||| |||| ||| |||| |||||| |||| | |
|
|
| T |
30483681 |
atactagttcgtaatttatggggctacgcttatagcaatgaagaagaagtggtaaattatgtagcaactatgatgccaattcttgccgtatcccacttac |
30483582 |
T |
|
| Q |
116 |
tggatggaatacaaagtgttctttcaggttt |
146 |
Q |
| |
|
| ||||| || ||| ||||||||||||||| |
|
|
| T |
30483581 |
tagatggcatgcaagctgttctttcaggttt |
30483551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 30468284 - 30468208
Alignment:
| Q |
533 |
gggatcatatgtgcactcttcgttcaagtagtttctctaacgatcattacaatacgcactgattgggagaaagaggt |
609 |
Q |
| |
|
|||||||||||||||||| | | ||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30468284 |
gggatcatatgtgcactcattgctcaagccttttctctaatgatcattacattacgcactgattgggagaaagaggt |
30468208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 30475769 - 30475659
Alignment:
| Q |
28 |
aatatatggggatatgcttatagcaatgaagaagaagttgtcaaatatgtagcaattatgttgcctattattgcagtatccaactttctggatggaatac |
127 |
Q |
| |
|
||||||||||| ||||| |||| ||| || |||||||||||| | ||||||||||||| || ||| ||||||||||| ||||||||||| | ||| |
|
|
| T |
30475769 |
aatatatggggctatgcatataccaaagacattgaagttgtcaaacaaatagcaattatgttaccaattcttgcagtatcctactttctggattcactac |
30475670 |
T |
|
| Q |
128 |
aaagtgttctt |
138 |
Q |
| |
|
||||||||||| |
|
|
| T |
30475669 |
aaagtgttctt |
30475659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 439
Target Start/End: Complemental strand, 30475419 - 30475286
Alignment:
| Q |
306 |
atccaggcactgctagaggagttggttggcaaaagagc-ggtgcatatgtcaatctcgggtcatactaggtagttgggattccagcagcagttgtattag |
404 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| ||| |||||| ||||||| | ||||||| ||| ||||||||||||||||||| | |||| | |
|
|
| T |
30475419 |
atccaggcattgctagaggatctggtttgcaaaa-agctggtgcagttgtcaatttggggtcatgctatttagttgggattccagcagccataatatttg |
30475321 |
T |
|
| Q |
405 |
cttttgtattgcatgttggcgggaaggtaaataaa |
439 |
Q |
| |
|
|||||||||||||| | || | |||||||| |||| |
|
|
| T |
30475320 |
cttttgtattgcatatcggtgtgaaggtaattaaa |
30475286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 718 - 786
Target Start/End: Complemental strand, 30467992 - 30467924
Alignment:
| Q |
718 |
ttcaggcaaagaaggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
786 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | | |||||| ||||||| |||||||||||||||| |
|
|
| T |
30467992 |
ttcaggcaaacaaggctaaagatagagtttataaatgtataacaccagagagtttagtctcatgaagaa |
30467924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 30474882 - 30474815
Alignment:
| Q |
719 |
tcaggcaaagaaggctactgatagagtttatgattcaataacaacagagagcttagtctcatgaagaa |
786 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| | || |||||| |||||||||||||| ||||||||| |
|
|
| T |
30474882 |
tcaggcaaacaaggctagagatagagtctataaatctataacaccagagagcttagtcacatgaagaa |
30474815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University