View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_low_2 (Length: 625)
Name: NF16083_low_2
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 596
Target Start/End: Original strand, 1904491 - 1905074
Alignment:
| Q |
20 |
agcttgagttctggaaaaaagaggcatgctgagtatagctgcttcatctggttcattgaaaatggaccgaacaatatttctgcgtgaagacacgaggtct |
119 |
Q |
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| T |
1904491 |
agcttgagtactaaaaaaaagaggcatgctgagtatagctgcttcatctggttcattgaaaatggaccgaacaatatttctgcacgaagacacgaggtct |
1904590 |
T |
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| Q |
120 |
gccgacaagagatgactgaccttaacatccagaagatgggattgaggagtgg-tggtggggcggagattgccgtcatttataatccagggtgagttccag |
218 |
Q |
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| T |
1904591 |
gccgacaagatatggtcgatcttaacatccagaagatgggattgaggagtgcatgctggggcggagattgccgtcatttctaatcta-------ttccag |
1904683 |
T |
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| Q |
219 |
acattaattttttcgcagttgccaactttccatctttaactaag-----tcaagggttgagaactccaaatgttcctccatgtgaaacttgggttccaag |
313 |
Q |
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| T |
1904684 |
acataaaaaaatccgcagttgccaactttccatctttaactaagatgtatcaagggttgagaacttcaaatgctcctccatgtgaaacttgggttccaag |
1904783 |
T |
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| Q |
314 |
aaatccttgtcgtggaagtatttagttttgagaacgccaagactcgacgaaggcttccaaattacaaaagcctatgtcactcaagtcttttcactctacc |
413 |
Q |
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| T |
1904784 |
aaatccttgtcgtggaagtatttagctttgagaacgccaagactcgacgaaggcttccaaattacaaaagcctatgtcacccaagtcttttcactctacc |
1904883 |
T |
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| Q |
414 |
caacacatttgt-cnnnnnnnggtgttaactaaattatcaatcaacc---attattgactt-ttagactaaccagctttaaatatcaatgcatagtaatt |
508 |
Q |
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| T |
1904884 |
tatcacatttgtaaaaaaaaaggtgttaactaaattataaatcaaccagtattattgaattcacagattaaccagctttaaatatcaatgcatagtaatt |
1904983 |
T |
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| Q |
509 |
aaattctttgaattttcaaaaataagtttgagacatgcaatacgtgaccaagagagacacatg---agtttgtttgcctttctctttggtg |
596 |
Q |
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| T |
1904984 |
aaattctttgaattttcaaaaataagtttgagatatacaataggtgaccaagagagacacatgactagtttagttgcctttctctttggtg |
1905074 |
T |
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