View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_low_4 (Length: 421)
Name: NF16083_low_4
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 38875048 - 38874715
Alignment:
| Q |
1 |
aatttccactaatcaataatcagtgatgccttaagtctactaataatagtgaatagtttnnnnnnnctaataatactgaattattccaattttcatttat |
100 |
Q |
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| T |
38875048 |
aatttccactaatcaataatcagtgatgccttaagtctactaataatagtgaatagtttaaaaaaactaataatactgaattattccaatttttatttat |
38874949 |
T |
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| Q |
101 |
tacttttgataaataatgaagaataaatttacactatatggaaacaattatttttnnnnnnnggtattttaatcttaattcaactctcccttttataatt |
200 |
Q |
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| T |
38874948 |
tacttttgataaataatgaagaataaatttacactatatggaaacaatcattttaaaaaaaaggtattttaatcttaattcaactctcccttttataatt |
38874849 |
T |
|
| Q |
201 |
ttgaactatccaaatcaatattccctttcttaaaatcatcatcatcatgacagtgaggcagtgatgcaaagcgcacttcccacaataaaaaacataaaag |
300 |
Q |
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| T |
38874848 |
ttgaactatccaaatcaatattccctttcttaaaatcatcatcatcatgacagtgaggcagtgatgcaaagcgcacttcccacaataaaaaacataaaag |
38874749 |
T |
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| Q |
301 |
accaagaaaaggaagatgaacaagaaacatactt |
334 |
Q |
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| T |
38874748 |
accaagaaaaggaagatgatcaagaaacatactt |
38874715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 38874338 - 38874268
Alignment:
| Q |
330 |
tacttgtaaatatatgtcaattctacgatgcacaagtgtatcacattatgttaaaattaatttctaccgtt |
400 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38874338 |
tacttataaatatatgtcaattctacgatgcacaagtgtattacattatgttaaaattaatttctaccgtt |
38874268 |
T |
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