View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_low_5 (Length: 382)
Name: NF16083_low_5
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 29561949 - 29561579
Alignment:
| Q |
1 |
tgcaagactattgtaagaagaatagtggagcaagttagagttgagacagaacaatggtcccaaatgcaggagatgctaggccaggtgagggaagagatgg |
100 |
Q |
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| T |
29561949 |
tgcaagactattgtaagaagaatagtggagcaagttagagttgagacagaacaatggtcccaaatgcaggagatgctaggccaggtgagggaagagatgg |
29561850 |
T |
|
| Q |
101 |
aagaactgcaggcttcacgagatttctggaaagatcgcgccttgcattctgattctcaaatccaatctctacacaatgatgtaagataaagtttattctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561849 |
aagaactgcaggcttcacgagatttctggaaagatcgcgccttgcattctgattctcaaatccaatctctacacaatgatgtaagataaagtttattctt |
29561750 |
T |
|
| Q |
201 |
acattcaacaacctcttaggaccgtgtttacttctagtcgtttatttctggcgcttcctgtttgcattaacttttgtattttctttcacacaggtgcaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29561749 |
acattcaacaacctcttaggaccgtgtttacttctagtcgtttatttctggcgcttcctgtttgcattaac-tttgtattttctttcacacaggtgcaag |
29561651 |
T |
|
| Q |
301 |
agtggaaacaaagggctctttcatcagaaagtaagaaaaatgagattgaagaaaaactttccatgctctgtg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29561650 |
agtggaaacaaagggctctttcatcagaaagtaagaaaaatgagattgaagcaaaactttccatgctctgtg |
29561579 |
T |
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