View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_low_7 (Length: 253)
Name: NF16083_low_7
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 9398561 - 9398784
Alignment:
| Q |
13 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9398561 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatggcaccaagcaaagctggaacttcttgcattgct |
9398660 |
T |
|
| Q |
113 |
aaagtaaccccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgtcccctcacgtcaataaccccattggaatttgttgaatttt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
9398661 |
aaagtaaccccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgccccctcacatcaataaccccattggaatttgttgaatttt |
9398760 |
T |
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| Q |
213 |
ttagaaatctttctggattaaatt |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
9398761 |
ttagaaatctttctggattaaatt |
9398784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 9381136 - 9381359
Alignment:
| Q |
13 |
aatatcaccacccttcaaaatctcacccttaggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
112 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381136 |
aatatcacgacccttcaaaatctcacccttgggacccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgct |
9381235 |
T |
|
| Q |
113 |
aaagtaaccccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgtcccctcacgtcaataaccccattggaatttgttgaatttt |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9381236 |
aaagtaactccaggacacatccttcttcctgacccaaatggcaaaatctgaaaattttgtcccctcacgtcaataaccccattggaatttgctgaatttt |
9381335 |
T |
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| Q |
213 |
ttagaaatctttctggattaaatt |
236 |
Q |
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||||||| |||||||||||||||| |
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| T |
9381336 |
ttagaaacctttctggattaaatt |
9381359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 23244784 - 23244654
Alignment:
| Q |
56 |
ttaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaaccccaggacacatccttcttcctgacccaaatggca |
155 |
Q |
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||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||| | |
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| T |
23244784 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggta |
23244685 |
T |
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| Q |
156 |
aaatctgaaaattttgtcccctcacgtcaat |
186 |
Q |
| |
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|| ||||||| ||||||||| || ||||| |
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| T |
23244684 |
gaagttgaaaatgttgtcccctaacatcaat |
23244654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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