View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16083_low_8 (Length: 249)
Name: NF16083_low_8
Description: NF16083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16083_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 37603178 - 37603383
Alignment:
| Q |
38 |
aataatgaatcaaatccaatttgatcatatgcatactatgttcttatgaaaattaaatgggaacatggatacatctcacattccacaacaattactgaaa |
137 |
Q |
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| T |
37603178 |
aataatgaatcaaacccaatttgatcatatgcatactatgttcttatgaaaattaaacgggaacatggatacatctcacagtccacaagaattactgaaa |
37603277 |
T |
|
| Q |
138 |
ttgatatcaaacttaca-nnnnnnnnaatcctttgatttgctagtctagaccacaattaaggtcatatgcacaattagaaattttctcaaccattgttgc |
236 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| |||||| |
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| T |
37603278 |
ttgatatcaaacttacatttttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacctctgttgc |
37603377 |
T |
|
| Q |
237 |
agtgat |
242 |
Q |
| |
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|||||| |
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| T |
37603378 |
agtgat |
37603383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 46557815 - 46557610
Alignment:
| Q |
38 |
aataatgaatcaaatccaatttgatcatatgcatactatgttcttatgaaaattaaatgggaacatggatacatctcacattccacaacaattactgaaa |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
46557815 |
aataatgaatcaaacccaatttgatcatatgcatactatgttcttatgaaaattaaacgggaacatggatacatctcacagtccacaagaattactgaaa |
46557716 |
T |
|
| Q |
138 |
ttgatatcaaacttaca-nnnnnnnnaatcctttgatttgctagtctagaccacaattaaggtcatatgcacaattagaaattttctcaaccattgttgc |
236 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||| |||||| |
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| T |
46557715 |
ttgatatcaaacttacatttttttctattcctttgatttgctagtctagaccacaattcatgtcatatgtacaattagaaactttctcaacctctgttgc |
46557616 |
T |
|
| Q |
237 |
agtgat |
242 |
Q |
| |
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|||||| |
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| T |
46557615 |
agtgat |
46557610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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