View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_high_2 (Length: 331)
Name: NF16085_high_2
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 41720234 - 41719934
Alignment:
| Q |
15 |
atgaaaatgataatcgttctcttttatacttggagaacttgacactcccttcggtaggtttactaacactattttctcttcaattcaatctccatatata |
114 |
Q |
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| T |
41720234 |
atgaaaatgataatcgttctcttttatacttggagaacttgacactcccttcggtaggtttactaacactattttctcttcaattcaatctccatatata |
41720135 |
T |
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| Q |
115 |
tgttttaacttttaatccaaaaacaaatatcaatatctatcatcccttgccatttaattttttgttatttgctgtgctgaatgaatgattgttaatacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41720134 |
tgttttaacttttaatccaaaaacaaatatcaatatctatcatcccttgccatttaattttttgttatttgctgtgctgaatgaatgattgttaatacaa |
41720035 |
T |
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| Q |
215 |
aactcaatatgaaaacttttgtttcctgnnnnnnncttcccatcctttctagcttgcgaagctaaatattttcagaaatcatgcaaacaaacaattgttg |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41720034 |
aactcaatatgaaaacttttgtttcctgtttttttcttcccatcttttctagcttgcgaagctaaatattttcagaaatcatgcaaacaaacaattgttg |
41719935 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
41719934 |
t |
41719934 |
T |
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