View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16085_high_3 (Length: 322)

Name: NF16085_high_3
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16085_high_3
NF16085_high_3
[»] chr8 (4 HSPs)
chr8 (1-306)||(44506117-44506421)
chr8 (1-256)||(18176657-18176913)
chr8 (1-89)||(24956198-24956286)
chr8 (182-290)||(29564319-29564426)
[»] chr4 (4 HSPs)
chr4 (1-306)||(10012651-10012955)
chr4 (1-306)||(10019792-10020096)
chr4 (182-290)||(14641026-14641133)
chr4 (182-290)||(26110470-26110577)
[»] chr3 (2 HSPs)
chr3 (1-306)||(3589709-3590013)
chr3 (1-306)||(9787782-9788086)
[»] scaffold0005 (1 HSPs)
scaffold0005 (182-290)||(176159-176266)
[»] chr1 (2 HSPs)
chr1 (1-97)||(32604301-32604397)
chr1 (248-302)||(38318637-38318691)
[»] chr2 (1 HSPs)
chr2 (182-277)||(7230201-7230295)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 44506117 - 44506421
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  44506117 caattactaggaaaagaaactggtttaggatggaatcatcatataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtacta 44506216  T
Q  101 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  44506217 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacatgagaatgtgaaatatgcga 44506316  T
Q  201 aatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtg 300  Q
    |||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  44506317 aatttcgatttcaaggtttggaat-tttgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtgcatgtgcaccagctatgggtg 44506415  T
Q  301 tgccat 306  Q
    ||||||    
T  44506416 tgccat 44506421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 18176913 - 18176657
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    |||||| | ||||||||||| ||| |  |||||| ||| || |||||||||||||||| |||| || | ||||||||||||||||||||  | |||| ||    
T  18176913 caattaatcggtaaagaaacaggtttgagatggaatcaccagataggaaatattgatgttgatgcttcatggtaggatgctaagataagactgagtatta 18176814  T
Q  101 tgaa-ctttaatttttattcattg-aaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgc 198  Q
    | ||  || ||||||||| || || ||| | |||| || ||||| | | | || ||| |||| | || ||||||||||  || |||||| | ||||||||    
T  18176813 taaatattgaatttttatccagtgaaaattgaataagataatttggtttgtctgaatattatttcttgttattggttatgcaggagaatgtcaaatatgc 18176714  T
Q  199 gaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggaga 256  Q
     |||||||| | ||||||||| |||| ||| ||||||| ||||| ||| |||||||||    
T  18176713 aaaatttcgctatcaaggtttagaat-ttcatgatgaactgaaaatcatatttggaga 18176657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 24956198 - 24956286
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataag 89  Q
    |||||| | ||||||||||| ||| | ||||||| ||| || |||||||||||||||| |||| || | |||| |||||||||||||||    
T  24956198 caattaattggtaaagaaacaggtttgggatggaatcaccagataggaaatattgatgttgatgcttcatggtgggatgctaagataag 24956286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 29564319 - 29564426
Alignment:
Q  182 gagaatatgaaatatgcgaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaa 281  Q
    |||||| |||||||||| ||||||| |  |||| | ||| ||| ||||||| ||||||||||| | |||||||||||||||| |||| ||||||||  ||    
T  29564319 gagaatgtgaaatatgcaaaatttcaaagtcaaagattgaaat-ttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatggcaa 29564417  T
Q  282 tgggcacca 290  Q
    ||| |||||    
T  29564418 tggacacca 29564426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10012955 - 10012651
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||  |||| ||||||||||||| ||||||    
T  10012955 caattactaggtaaagaaactggtttaggatggaatcatcagataggaaatattgatgttgattctgcttggtgcgatgataagataagggttggtacta 10012856  T
Q  101 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||    
T  10012855 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaggagaatgtgaaatatgaga 10012756  T
Q  201 aatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtg 300  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10012755 aatttcgatttcaaggtttgaaat-ttcgtgatgaattgaaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccaactatgggtg 10012657  T
Q  301 tgccat 306  Q
    ||||||    
T  10012656 tgccat 10012651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10020096 - 10019792
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||  |||| ||||||||||||| ||||||    
T  10020096 caattactaggtaaagaaactggtttaggatggaatcatcagataggaaatattgatgttgattctgcttggtgcgatgataagataagggttggtacta 10019997  T
Q  101 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||    
T  10019996 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaggagaatgtgaaatatgaga 10019897  T
Q  201 aatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtg 300  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10019896 aatttcgatttcaaggtttgaaat-ttcgtgatgaattgaaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccaactatgggtg 10019798  T
Q  301 tgccat 306  Q
    ||||||    
T  10019797 tgccat 10019792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 14641026 - 14641133
Alignment:
Q  182 gagaatatgaaatatgcgaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaa 281  Q
    |||||| |||||||||| ||||||| |  |||||| ||||||| ||||||| ||||||||||| | |||||||||||||||| |||| ||||||||  ||    
T  14641026 gagaatgtgaaatatgcaaaatttcaaagtcaaggattggaat-ttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatgccaa 14641124  T
Q  282 tgggcacca 290  Q
    ||| |||||    
T  14641125 tggacacca 14641133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 26110470 - 26110577
Alignment:
Q  182 gagaatatgaaatatgcgaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaa 281  Q
    |||||| |||||||||| ||||||| |  |||||| ||||||| ||||||| ||||||||||| | |||||||||||||||| |||| ||| ||||  ||    
T  26110470 gagaatgtgaaatatgcaaaatttcaaagtcaaggattggaat-ttcgtgaggaattgaaatttatatttggagagattgtgacaacaagttaatgccaa 26110568  T
Q  282 tgggcacca 290  Q
    ||| |||||    
T  26110569 tggacacca 26110577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 3589709 - 3590013
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  3589709 caattactaggtaaagaaactggtttaggatggaatcatcagataggaaatattgatgttgattctgcttggtgggatgctaagataagggttagtacta 3589808  T
Q  101 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgcga 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  3589809 tgaactttaatttttattcattgaaagtaagtaggagaatttagatagcctaaattttatctaattttattggttacacaggagaatgtgaaatatgcga 3589908  T
Q  201 aatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtg 300  Q
    |||||||||||||||||||| ||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  3589909 aatttcgatttcaaggtttgaaat-ttcgagatgaattggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtg 3590007  T
Q  301 tgccat 306  Q
    ||||||    
T  3590008 tgccat 3590013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 9788086 - 9787782
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagtacta 100  Q
    ||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  9788086 caattactaggaaaagaaactggtttaggatggaatcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtacta 9787987  T
Q  101 tgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacaagagaatatgaaatatgcga 200  Q
     ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |    
T  9787986 cgaactttaaattttattcattgaaaataaataggagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcaa 9787887  T
Q  201 aatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtg 300  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  9787886 aatttcgatttcaaggtttggaat-ttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtg 9787788  T
Q  301 tgccat 306  Q
    ||||||    
T  9787787 tgccat 9787782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 176266 - 176159
Alignment:
Q  182 gagaatatgaaatatgcgaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatgtgaa 281  Q
    |||||| |||||||||| ||||||| |  |||||| ||||||| ||||||| ||||||||||| | |||||||||||||||| |||| ||||||||  ||    
T  176266 gagaatgtgaaatatgcaaaatttcaaagtcaaggattggaat-ttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatgccaa 176168  T
Q  282 tgggcacca 290  Q
    ||| |||||    
T  176167 tggacacca 176159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32604301 - 32604397
Alignment:
Q  1 caattactaggtaaagaaactggtataggatggactcatcatataggaaatattgatggtgattctgcttggtaggatgctaagataagggttagta 97  Q
    |||||| | ||||||||||| ||| | ||||||| || ||| |||||||||||||||| |||| || | |||| |||||||||||||||||| ||||    
T  32604301 caattaattggtaaagaaacaggtttgggatggaatcctcagataggaaatattgatgctgatgcttcatggtgggatgctaagataagggtgagta 32604397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 38318691 - 38318637
Alignment:
Q  248 atttggagagattgtggcaactagtcaatgtgaatgggcaccaactatgggtgtg 302  Q
    |||||| |||||| |||||||||||||||||| |||||||||| |||||||||||    
T  38318691 atttggggagattatggcaactagtcaatgtgcatgggcaccagctatgggtgtg 38318637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 7230201 - 7230295
Alignment:
Q  182 gagaatatgaaatatgcgaaatttcgatttcaaggtttggaatgttcgtgatgaattgaaattcaaatttggagagattgtggcaactagtcaatg 277  Q
    |||||| |||||||||| ||||||| |  |||||| ||| ||| ||||||| ||||||||||| | |||||||||||||||| |||| ||||||||    
T  7230201 gagaatgtgaaatatgcaaaatttcaaagtcaaggattgaaat-ttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatg 7230295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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