View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_high_5 (Length: 249)
Name: NF16085_high_5
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 18155287 - 18155066
Alignment:
| Q |
16 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttggcaatctgttttcgcattctattaaacaaattggattgaaaaatatgtaa |
115 |
Q |
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| T |
18155287 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttggcaatctgttttcgcattgtattaaacaaattggattgaaaaatatgtaa |
18155188 |
T |
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| Q |
116 |
tcttttacaaaatttatgacaatggaaaatgcagctatcactatatatcgattaagtaatcctttgatctatttgacgatttcataagttaatctaaaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |
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| T |
18155187 |
tcttttacaaaatttatgacaatggaaaatgcagccatcactatatatcgattaagtaatcctttgatctattagacgatttcatagactaatctgaaca |
18155088 |
T |
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| Q |
216 |
tcaacaca-ggatgaaggtaaa |
236 |
Q |
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|||||||| ||||||||||||| |
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| T |
18155087 |
tcaacacacggatgaaggtaaa |
18155066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 23001499 - 23001376
Alignment:
| Q |
16 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttggcaatctgttttcgcattctattaaacaaattggattgaaaaatatgtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23001499 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttgacaatctgttttcgcatgctattaaacaaattggattgaaaaatatgtaa |
23001400 |
T |
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| Q |
116 |
tcttttacaaaatttatgacaatgga |
141 |
Q |
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|||||||||||| |||||||||||| |
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| T |
23001399 |
tcttttacaaaa--tatgacaatgga |
23001376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 23786891 - 23787014
Alignment:
| Q |
16 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttggcaatctgttttcgcattctattaaacaaattggattgaaaaatatgtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23786891 |
aagtattcttgttgtaaagtaaccatagcttgtttagacaacttatcttgacaatctgttttcgcatgctattaaacaaattggattgaaaaatatgtaa |
23786990 |
T |
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| Q |
116 |
tcttttacaaaatttatgacaatgga |
141 |
Q |
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|||||||||||| |||||||||||| |
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| T |
23786991 |
tcttttacaaaa--tatgacaatgga |
23787014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 23001377 - 23001322
Alignment:
| Q |
165 |
gattaagtaatcctttgatctatttgacgatttcataagttaatctaaacatcaac |
220 |
Q |
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| T |
23001377 |
gattaagtaatccttcgatctatttgatgatttcataaattaatctaaacatcaac |
23001322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 23787013 - 23787068
Alignment:
| Q |
165 |
gattaagtaatcctttgatctatttgacgatttcataagttaatctaaacatcaac |
220 |
Q |
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||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
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| T |
23787013 |
gattaagtaatccttcgatctatttgatgatttcataaattaatctaaacatcaac |
23787068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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