View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16085_high_7 (Length: 243)

Name: NF16085_high_7
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16085_high_7
NF16085_high_7
[»] chr3 (9 HSPs)
chr3 (1-230)||(11495467-11495696)
chr3 (10-227)||(2921537-2921754)
chr3 (9-230)||(3872141-3872362)
chr3 (10-230)||(10079696-10079916)
chr3 (10-230)||(10186666-10186886)
chr3 (10-230)||(11489225-11489445)
chr3 (10-230)||(5967828-5968047)
chr3 (1-166)||(7489106-7489272)
chr3 (1-101)||(4058211-4058311)
[»] scaffold0603 (1 HSPs)
scaffold0603 (10-230)||(2710-2930)
[»] chr1 (1 HSPs)
chr1 (1-230)||(17313772-17313998)
[»] chr4 (1 HSPs)
chr4 (10-230)||(5990535-5990755)
[»] chr5 (1 HSPs)
chr5 (49-227)||(16448836-16449014)
[»] chr8 (1 HSPs)
chr8 (17-230)||(18390073-18390286)
[»] chr2 (1 HSPs)
chr2 (1-55)||(42506540-42506594)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11495696 - 11495467
Alignment:
Q  1 aatttggaattccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495696 aatttggaattccttcctcgtgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgg 11495597  T
Q  101 gtgctctccctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11495596 gtgctctccctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtacttgcagaaagagcatccgaaaagagtctctcgtttct 11495497  T
Q  201 tagaagcatcaaaatatgggattgtaatga 230  Q
    ||||||||||||||||||||||||||||||    
T  11495496 tagaagcatcaaaatatgggattgtaatga 11495467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 2921537 - 2921754
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    ||||||||| ||||| |||| |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  2921537 ttccttcctgatgaagacttgcacaattacacatcgctcgaggaattgaaaatatcttatagctgtaattcaatgatatcatttaccttgggtgctcttc 2921636  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||  | | |||||| |||| |||| || |||||||||||||| ||||||||||||||    
T  2921637 ctgtcctcaagagtttgtttattgagggttgtaaaaatctgaaatacacattaattggagaaggagcgtcggaaaagagtctctcatttcttagaagcat 2921736  T
Q  210 caaaatatgggattgtaa 227  Q
    ||||||||||||||||||    
T  2921737 caaaatatgggattgtaa 2921754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 3872141 - 3872362
Alignment:
Q  9 attccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctc 108  Q
    |||||||||||||||||||||  ||| ||||||||  || ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  3872141 attccttcctcatgaatacttggacaattacacatcacttgaggaattgaaaatatcttatagctataattcaatgatatcatttaacttgggtgctctc 3872240  T
Q  109 cctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagca 208  Q
    ||||| ||||||||| |||| |||||||| |||| |||| ||||||| |||  |||||||||||  ||||  ||||||||||| || | |||||||||||    
T  3872241 cctgttctcaagagtctgtttattgagggctgtagaaatttgaaatcgatatcaattgcagaaaatgcattagaaaagagtctttcatatcttagaagca 3872340  T
Q  209 tcaaaatatgggattgtaatga 230  Q
    | ||||||||||| | ||||||    
T  3872341 ttaaaatatgggactataatga 3872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 10079696 - 10079916
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    ||||||||||||||||||||  ||| || |||||  || |||||||| | ||||||||||||||||||||||||||| ||||||||||||||  ||||||    
T  10079696 ttccttcctcatgaatacttggacaattccacatatcttgaggaattaacaatatcttatagctgtaattcaatgatatcatttaccttgggatctctcc 10079795  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    || ||||||||||| ||||  ||||||| ||||||||||||||||| |||  ||||||||||   || || || ||||||||||| ||||||||||||||    
T  10079796 ctatcctcaagagtatgttttttgagggttgtaaaaatctgaaatcgatatcaattgcagaagacgcgtcagagaagagtctctcatttcttagaagcat 10079895  T
Q  210 caaaatatgggattgtaatga 230  Q
     ||||||||||| ||||||||    
T  10079896 taaaatatgggactgtaatga 10079916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 10186666 - 10186886
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    ||||||||||||||||||||  ||| || |||||  || |||||||| | ||||||||||||||||||||||||||| ||||||||||||||  ||||||    
T  10186666 ttccttcctcatgaatacttggacaattccacatatcttgaggaattaacaatatcttatagctgtaattcaatgatatcatttaccttgggatctctcc 10186765  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    || ||||||||||| ||||  ||||||| ||||||||||||||||| |||  ||||||||||   || || || ||||||||||| ||||||||||||||    
T  10186766 ctatcctcaagagtatgttttttgagggttgtaaaaatctgaaatcgatatcaattgcagaagacgcgtcagagaagagtctctcatttcttagaagcat 10186865  T
Q  210 caaaatatgggattgtaatga 230  Q
     ||||||||||| ||||||||    
T  10186866 taaaatatgggactgtaatga 10186886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 11489445 - 11489225
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    ||||| ||| |||||||||| ||   ||||||||  || || |||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||    
T  11489445 ttcctacctaatgaatacttgcaacattacacatcgcttgaagaattgaaaatatcttatagttgtaattcaatgatatcgtttaccttgggcgctctcc 11489346  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccg-aaaagagtctctcgtttcttagaagca 208  Q
    |||||||||||||| |||| ||||||||||||||||||||||| || ||| ||||||||| | ||    ||| ||||||||||||| |||||||| ||||    
T  11489345 ctgtcctcaagagtctgtttattgagggatgtaaaaatctgaagtcgatattaattgcag-aggacgggccgcaaaagagtctctcatttcttagtagca 11489247  T
Q  209 tcaaaatatgggattgtaatga 230  Q
    ||||||||||||||||||||||    
T  11489246 tcaaaatatgggattgtaatga 11489225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 5967828 - 5968047
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    |||||||||||||||||||| ||||  |||||||  || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |||||    
T  5967828 ttccttcctcatgaatacttgcacaagtacacatcgcttgaggaattgaaaatatcttatagttgtaattcaatgatatcatttactttgggtgttctcc 5967927  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    | |||||||||||| |||| ||||| || ||||| |||||||| || ||| ||||||| |||   || ||  ||||||||||||| ||||||| ||||||    
T  5967928 cggtcctcaagagtctgtttattgaaggttgtaagaatctgaagtcgatattaattgcggaagacgcgtcgcaaaagagtctctcatttcttaaaagcat 5968027  T
Q  210 caaaatatgggattgtaatga 230  Q
    |||||||| ||||||||||||    
T  5968028 caaaatat-ggattgtaatga 5968047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 7489272 - 7489106
Alignment:
Q  1 aatttggaattccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgg 100  Q
    |||||||||||||||| ||| || ||||| |||| ||||||||| | | ||||||||| |||||||||| | |||||||||||||| |||||||| ||||    
T  7489272 aatttggaattccttcatcacgattacttgcacaattacacattacacaaggaattgataatatcttattgttgtaattcaatgatatcatttacattgg 7489173  T
Q  101 gtgc--tctccctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattg 166  Q
    | ||  ||| |||  |||||||||| |||| |||||||| ||||||||||||||||| ||| ||||||    
T  7489172 g-gcagtcttcctaacctcaagagtctgttgattgagggttgtaaaaatctgaaatccatattaattg 7489106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4058311 - 4058211
Alignment:
Q  1 aatttggaattccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgg 100  Q
    |||||||| ||| ||||  |||||| || ||||||||||| ||  || ||| | ||| |||||||  |||| |||||||||||||  |||||||||||||    
T  4058311 aatttggagttcattccctatgaattctctcacagttacaaatcacttgagaatttggaaatatccgatagttgtaattcaatgacatcatttaccttgg 4058212  T
Q  101 g 101  Q
    |    
T  4058211 g 4058211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 2930 - 2710
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    |||||||||||||||||||| |||| ||||||||  || ||| |||| |||||||||||||| |||||||||||||| |||||| ||||||| |||||||    
T  2930 ttccttcctcatgaatacttgcacaattacacatcacttgagaaattaaaaatatcttatagttgtaattcaatgatatcatttgccttgggcgctctcc 2831  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||| |||| || |||||||||||||| ||||||||||||||    
T  2830 ctgtcctcaatagtttgtttattgagggttgtaaaaatctgaaatcgatattaattgcagaaggagcgtcggaaaagagtctctcatttcttagaagcat 2731  T
Q  210 caaaatatgggattgtaatga 230  Q
    || ||||||| ||||||||||    
T  2730 cataatatggtattgtaatga 2710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17313772 - 17313998
Alignment:
Q  1 aatttggaattccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgg 100  Q
    ||||||||||||||||   |||| ||  |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  17313772 aatttggaattccttc---atgattatcttcacagttacacattgctcgaggaattgagaatatcttataactgtaattcaatgatatcatttaccttgg 17313868  T
Q  101 gtgctctccctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttct 200  Q
    ||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||||| |||||||||||   |  ||  |||| |||||||| |||||    
T  17313869 gtgctctccctgtcctcaagagtctgtttattgaggtttgtaaaaatctgaaatcaatattaattgcagaagacgggtcgcaaaatagtctctcatttct 17313968  T
Q  201 tagaagcatcaaaatatgggattgtaatga 230  Q
    ||||||||||||||||||||||||||||||    
T  17313969 tagaagcatcaaaatatgggattgtaatga 17313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 5990535 - 5990755
Alignment:
Q  10 ttccttcctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctcc 109  Q
    |||||||||||||||||| |  ||||||||||||  || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  5990535 ttccttcctcatgaatacctggacagttacacatcacttgaggaattgaaaatatcttatagttgtaattcaatgatatcattcaccttgggtgctctcc 5990634  T
Q  110 ctgtcctcaagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcat 209  Q
    |||||||||||||| |||| || ||||| ||||||||||||||||| ||| |||||||||||      || |||||||||||||| ||||||||||||||    
T  5990635 ctgtcctcaagagtctgtttatcgagggttgtaaaaatctgaaatcgatattaattgcagaagacatgtcggaaaagagtctctcatttcttagaagcat 5990734  T
Q  210 caaaatatgggattgtaatga 230  Q
    |||||||||||| ||||||||    
T  5990735 caaaatatgggactgtaatga 5990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 16448836 - 16449014
Alignment:
Q  49 gaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctccctgtcctcaagagtttgttcattgagggatgtaaaaatc 148  Q
    |||||||| | ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  16448836 gaggaattaacaatatcttatagctgtaattcaatggtatcatttaccttgggcgctctccctgtcctcaagagtttgttcattgagggttgtaaaaatc 16448935  T
Q  149 tgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcatcaaaatatgggattgtaa 227  Q
    ||||||| ||| |||||||||||   |  ||| |||| |||||||| |||||||||||||||||||||||||| |||||    
T  16448936 tgaaatcgatattaattgcagaagacgactcccaaaatagtctctcatttcttagaagcatcaaaatatgggactgtaa 16449014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 18390073 - 18390286
Alignment:
Q  17 ctcatgaatactttcacagttacacattcctcgaggaattgaaaatatcttatagctgtaattcaatgatttcatttaccttgggtgctctccctgtcct 116  Q
    |||||||||| || |||| ||||||||  || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  18390073 ctcatgaatatttgcacaattacacatcgcttgaggaattgaaaatatcttatagctgtaattcaatgatatcatttactttgggtgctctccctatcct 18390172  T
Q  117 caagagtttgttcattgagggatgtaaaaatctgaaatcaatagtaattgcagaaagagcatccgaaaagagtctctcgtttcttagaagcatcaaaata 216  Q
    ||||||| |||| || ||||| ||||||||||||||||||||| ||  ||  |||   || ||  | ||||||||||| |||||||||||||||||||||    
T  18390173 caagagtctgtttatggagggttgtaaaaatctgaaatcaatattagctgttgaagatgcgtcgcagaagagtctctcatttcttagaagcatcaaaata 18390272  T
Q  217 tgggattgtaatga 230  Q
    ||||||||||||||    
T  18390273 tgggattgtaatga 18390286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42506540 - 42506594
Alignment:
Q  1 aatttggaattccttcctcatgaatactttcacagttacacattcctcgaggaat 55  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||| ||| ||||||    
T  42506540 aatttggaattcctttctcatgaatacttgcacaattacacattgctcaaggaat 42506594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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