View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_high_9 (Length: 239)
Name: NF16085_high_9
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 18514184 - 18514243
Alignment:
| Q |
23 |
tatcaattaggttggtttggcccaaagggttatgctttcataatgtt-gcgaactaaagt |
81 |
Q |
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| T |
18514184 |
tatcaattaggttggtttggccgaaagggttatactttcataatgttagcgaactaaagt |
18514243 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 18514277 - 18514314
Alignment:
| Q |
174 |
aaattgactattcttctttagtgagatttcttttttaa |
211 |
Q |
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| T |
18514277 |
aaattgactattcttctttagtgagatttcttttttaa |
18514314 |
T |
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