View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_low_1 (Length: 599)
Name: NF16085_low_1
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 12 - 582
Target Start/End: Complemental strand, 880475 - 879905
Alignment:
| Q |
12 |
atgaatgactataattgtatttgtaggtaatggcttggaggttgcaagcaaggaagactcctagttactttgataatgcatgtgttatctgtaattaatt |
111 |
Q |
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| T |
880475 |
atgaatgactataattgtatttgtaggtaatggcttggaggttgcaagcaaggaagactcctagttactttgataatgcatgtgttatctgtaattaatt |
880376 |
T |
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| Q |
112 |
ataaataaaaatgctccttattatcatttaagaacaccaaacatatgttaatgttacaagaacatttcctccatctagatgctgctgtaatgcaccttta |
211 |
Q |
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| T |
880375 |
ataaataaaaatgctccttattatcatttaagaacaccaaacatatgttaatgttacaagaacatttcctccatctagatgctgctgtaatgcaccttta |
880276 |
T |
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| Q |
212 |
ttaataaaataaagctagattttgataaaatattgctacttgtgatttactgtcgtgtgttgagctgtgtttagtccaaaagaaattgaaagaagagaat |
311 |
Q |
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| T |
880275 |
ttaataaaataaagctagattttgataaaatattgctacttgtgatttactgtcgtgtgttgagctgtgtttagtccaaaagaaattgaaagaagagaat |
880176 |
T |
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| Q |
312 |
ggaaaaggaatccattgtactcatctgttagttgcatttcattctcccttttacctcatttgaaagcctttgtctattttgtgagccttcatgacaaata |
411 |
Q |
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| T |
880175 |
ggaaaaggaatccattgtactcatctgttattttcatttcattctcccttttacctcatttgaaagcctttgtctattttgtgagccttcatgacaaata |
880076 |
T |
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| Q |
412 |
tatttgcagagaatcattgctaacccaattcaaagaggtttgttgcttcttgaaaggaatgaacagagcatgaatgctgctgatgcatgtcagcagaatg |
511 |
Q |
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| T |
880075 |
tatttgcagagaatcattgctaacccaattcaaagaggttttttgcttcttgaaaggaatgaacagagcatgaatgctgctgatgcatgtcagcagaatg |
879976 |
T |
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| Q |
512 |
atgcatcttgtatacttaggtactcatcttatatacgcatgagaaatggataaattaaaataaacagaaag |
582 |
Q |
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| T |
879975 |
atgcatcttgtatacttaggtactcatcttatatacgcatgagaaatggataaattaaaataaacagaaag |
879905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 465
Target Start/End: Original strand, 1161217 - 1161308
Alignment:
| Q |
374 |
aaagcctttgtctattttgtgagccttcatgacaaatatatttgcagagaatcattgctaacccaattcaaagaggtttgttgcttcttgaa |
465 |
Q |
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| T |
1161217 |
aaagcttttgtctattttttgagcgtacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaa |
1161308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 546
Target Start/End: Original strand, 1161309 - 1161362
Alignment:
| Q |
493 |
gatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatata |
546 |
Q |
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| T |
1161309 |
gatgcatgtaagctgaatgatgcatcttgtatacttagatactcatcttatata |
1161362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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