View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_low_10 (Length: 240)
Name: NF16085_low_10
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_low_10 |
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| [»] scaffold0695 (1 HSPs) |
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Alignment Details
Target: scaffold0695 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 4756 - 4972
Alignment:
| Q |
8 |
aagaatatagagaaaatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagca |
107 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4756 |
aagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaatagca |
4855 |
T |
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| Q |
108 |
aactgatgaatgctccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
4856 |
aactgatgaatgctccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatcaag |
4955 |
T |
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| Q |
208 |
cctaccattgttgcgtg |
224 |
Q |
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||||||||||||||||| |
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| T |
4956 |
cctaccattgttgcgtg |
4972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 14125872 - 14125656
Alignment:
| Q |
8 |
aagaatatagagaaaatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagca |
107 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14125872 |
aagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttattagaaaagcaactaaaacagaaacataaaaatagca |
14125773 |
T |
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| Q |
108 |
aactgatgaatgctccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaag |
207 |
Q |
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| T |
14125772 |
aactgatgaatgcttcttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtcttcatctggatgatccttatgagtatgaagatcaag |
14125673 |
T |
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| Q |
208 |
cctaccattgttgcgtg |
224 |
Q |
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||||||||||||||||| |
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| T |
14125672 |
cctaccattgttgcgtg |
14125656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 14115542 - 14115335
Alignment:
| Q |
8 |
aagaatatagagaaaatgcctcacgtactagcaatcaacaaatccctaaacatgggcaacttattagaaaatcaactaaaacagaaacataaaaatagca |
107 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
14115542 |
aagaaaatagagaaaatgcctcacgtactagcaagcaacaaatccctaaacatgggcaacttaatagaaaagcaactaaaacagaaacataaaaatagca |
14115443 |
T |
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| Q |
108 |
aactgatgaatgctccttgcagctagtacttttaaagttcaatgtggtcatagctaccattgtattcatctgtatgatccttatgagtatgaagatcaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||| || ||||||||||||||||||||||| | |||| ||||| |
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| T |
14115442 |
aactgatgaatgctccttgcagctagtacttttaaagttcaacgggg---------ccatagtcttcatctgtatgatccttatgagaacgaaggtcaag |
14115352 |
T |
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| Q |
208 |
cctaccattgttgcgtg |
224 |
Q |
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||||||||||| ||||| |
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| T |
14115351 |
cctaccattgtcgcgtg |
14115335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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