View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16085_low_12 (Length: 209)

Name: NF16085_low_12
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16085_low_12
NF16085_low_12
[»] chr2 (8 HSPs)
chr2 (1-193)||(23864462-23864654)
chr2 (15-173)||(22788500-22788661)
chr2 (29-158)||(20571179-20571305)
chr2 (23-102)||(23757196-23757275)
chr2 (29-137)||(22626052-22626157)
chr2 (29-102)||(23756217-23756290)
chr2 (34-96)||(23840588-23840650)
chr2 (66-102)||(22723447-22723483)
[»] chr6 (3 HSPs)
chr6 (15-173)||(25779312-25779473)
chr6 (38-98)||(25741726-25741786)
chr6 (38-98)||(25747637-25747697)
[»] scaffold0624 (1 HSPs)
scaffold0624 (60-102)||(3822-3864)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 23864654 - 23864462
Alignment:
Q  1 ttgagaccaccaactgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864654 ttgagaccaccaactgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatat 23864555  T
Q  101 tgaagatgatagtgataactgcaagaaacaaaactagaacggacagataatgagacatttttccagcctttttaattatgactattggtatac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23864554 tgaagatgatagtgataactgcaagaaacaaaactagaacggacagataatgagacattttttcagcctttttaattatgactattggtatac 23864462  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 22788661 - 22788500
Alignment:
Q  15 tgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtg 114  Q
    ||||||| ||| ||||||||||| | ||| ||||||||| ||| |||||||||| |||||||| ||||||||| ||||||||||||||  ||||||||||    
T  22788661 tgtttctggatcaattgttggtgaccggttaatgatcggcccaacgggttgcgcgtgtatttggtgctttggatttcctgcaatattggtgatgatagtg 22788562  T
Q  115 ataactgcaagaaacaaaactagaacggaca---gataatgagacatttttccagccttttt 173  Q
     |||||||||||||||||||||  ||||| |    ||||| |||||||||||||||||||||    
T  22788561 ttaactgcaagaaacaaaactaacacggataagttataataagacatttttccagccttttt 22788500  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 20571179 - 20571305
Alignment:
Q  29 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtgataactgcaagaaa 128  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||   | | | |||||||| |||||||||    
T  20571179 ttgttggtggctggtaaatgatcggtccatcggtttgggcatgtatttgatgctttggattccctgcaatatt---ggtaagagtgataattgcaagaaa 20571275  T
Q  129 caaaactagaacggacagataatgagacat 158  Q
    ||||||||| ||||| | || |||||||||    
T  20571276 caaaactagcacggataaatgatgagacat 20571305  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 23757275 - 23757196
Alignment:
Q  23 gatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattg 102  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||  |||||| | ||||||||||||    
T  23757275 gatgagttgttggtggctggtaaatgatcggtccatcggtttgggcatgtatttgataatttggattccctgcaatattg 23757196  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 22626157 - 22626052
Alignment:
Q  29 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtgataactgcaagaaa 128  Q
    |||||||| ||||||| ||||| |||||||||| ||| ||||||||||||| ||||||| |||||||||||||  || | | ||| |||| |||||||||    
T  22626157 ttgttggttgctggtagatgattggtccatcggtttgggcatgtatttgatactttggatttcctgcaatatt--ag-taagagtaataattgcaagaaa 22626061  T
Q  129 caaaactag 137  Q
    |||||||||    
T  22626060 caaaactag 22626052  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 23756290 - 23756217
Alignment:
Q  29 ttgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattg 102  Q
    |||| |||||||||||||| ||||||||||||| | | ||||||||||||  ||||||| | ||||||||||||    
T  23756290 ttgtaggtggctggtaaataatcggtccatcggttggagcatgtatttgacactttggattccctgcaatattg 23756217  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 23840588 - 23840650
Alignment:
Q  34 ggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgca 96  Q
    |||||||||||| ||||| | |||| |||||||||||||  ||||||||||||| | ||||||    
T  23840588 ggtggctggtaactgatcagaccattgggttgcgcatgtcgttgatgctttggattccctgca 23840650  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 22723483 - 22723447
Alignment:
Q  66 cgcatgtatttgatgctttggacttcctgcaatattg 102  Q
    |||||||||||||||||||||| |||||| |||||||    
T  22723483 cgcatgtatttgatgctttggatttcctgtaatattg 22723447  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 25779312 - 25779473
Alignment:
Q  15 tgtttcttgatgaattgttggtggctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaatattgaagatgatagtg 114  Q
    ||||||| ||| ||||||||||| | ||| ||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||    
T  25779312 tgtttctggatcaattgttggtgaccggttaatgatcggcccaacgggttgcgcgtgtatttgatgctttggatttcctgcaatattggtgatgatagtg 25779411  T
Q  115 ataactgcaagaaacaaaactagaacggaca---gataatgagacatttttccagccttttt 173  Q
     |||||||||||||||||||||  ||||| |    ||||| |||||||||||||||||||||    
T  25779412 ttaactgcaagaaacaaaactaacacggataagttataataagacatttttccagccttttt 25779473  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 25741786 - 25741726
Alignment:
Q  38 gctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaat 98  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||||||||||    
T  25741786 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 25741726  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 25747697 - 25747637
Alignment:
Q  38 gctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaat 98  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||||||||||    
T  25747697 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 25747637  T

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Target: scaffold0624 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 3864 - 3822
Alignment:
Q  60 gggttgcgcatgtatttgatgctttggacttcctgcaatattg 102  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  3864 gggttgcgcatgtatttgatgctttggatttcctgtaatattg 3822  T

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