View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_low_2 (Length: 419)
Name: NF16085_low_2
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 11117688 - 11118100
Alignment:
| Q |
16 |
atactcactgtaagtacattttagaacatcttttagctaatgtgatagtacaa-----gtatcactcgtacgtatataaattttagctaatattgtgata |
110 |
Q |
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| T |
11117688 |
atactcactgcaagtacattttagaacattttttagctaatgtgatagtacaaagggagtatcactcgtacgtatataaattgtagctaatattgtgata |
11117787 |
T |
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| Q |
111 |
gtacaaagggactatcacttctatataagtgcacaataacaaactaataaagattgaaaagaaaacatgtttcgttctatttaggcatgttacaaaagca |
210 |
Q |
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| T |
11117788 |
gtagaaagggactatcacttgtatataagtgcataataacaaactaataatgattgaaatgaaaacatgtttcgttctatttaggcatgttataaaagca |
11117887 |
T |
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| Q |
211 |
agcagttcgtttaccaacatttggttgaggactagtggaggggaaattctttatgtcatta----atattcatgaataatgtcccactttcttcatgctg |
306 |
Q |
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| T |
11117888 |
agcagttcgtttaccaacatttgtttgaggactagtggaggggaaattctttatgtcattccatcatattcatgaataatgtcccactttcttcatgttg |
11117987 |
T |
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| Q |
307 |
ttatagttgtcaactagtttatcatcgcatcatgtcattcttttaatgaaaagatgattttgtggtttgtgtttattggagatctcgaccaatatttttt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11117988 |
ttatagttgtcaactagtttatcatcgcatcatgtcattcgtttaatgaaaagatgattttgtggtttgtgtttattggagatctcgaccaatatttttt |
11118087 |
T |
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| Q |
407 |
aaatcatttgaaa |
419 |
Q |
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| T |
11118088 |
aaatcatttgaaa |
11118100 |
T |
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