View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16085_low_6 (Length: 262)
Name: NF16085_low_6
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_low_6 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0400 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 7259 - 7468
Alignment:
| Q |
43 |
attggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatatccag |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7259 |
attggaataggagggtaaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccag |
7358 |
T |
|
| Q |
143 |
taagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttttgta |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
7359 |
caagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttccaattggacctgttttgta |
7458 |
T |
|
| Q |
243 |
ggcacctttg |
252 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7459 |
ggaacctttg |
7468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 13555 - 13713
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||| | ||||||| || |||| ||| ||||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
13555 |
tttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatatat |
13654 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaaca |
197 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
13655 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaaca |
13713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 7903 - 8112
Alignment:
| Q |
43 |
attggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatatccag |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7903 |
attggaataggagggtaaatgccattaaaggtgtagctaatgctttatgctatatgcatcacaattgctcaccttcaattgttcatcgtgatatatccag |
8002 |
T |
|
| Q |
143 |
taagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttttgta |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
8003 |
caagaatgttgttttggatttggaatatgtggctcatgtctcagacttcggaacagccaagtttcttaatcccgattcttccaattggacctgttttgta |
8102 |
T |
|
| Q |
243 |
ggcacctttg |
252 |
Q |
| |
|
|| ||||||| |
|
|
| T |
8103 |
ggaacctttg |
8112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 14198 - 14356
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||| | ||||||| || |||| ||| ||||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
14198 |
tttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgttcatcgagatatat |
14297 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaaca |
197 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
14298 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagacttcggaaca |
14356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 17028662 - 17028820
Alignment:
| Q |
94 |
atatgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17028662 |
atatgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
17028761 |
T |
|
| Q |
194 |
aacagttaagtttcttaatgtcgattcttccaattggacctcttttgtaggcacctttg |
252 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17028762 |
aacagctaagtttcttaatctcgattcttccaattggaccgcttttgtaggcacctttg |
17028820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 17559098 - 17559256
Alignment:
| Q |
94 |
atatgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17559098 |
atatgcatgatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcgg |
17559197 |
T |
|
| Q |
194 |
aacagttaagtttcttaatgtcgattcttccaattggacctcttttgtaggcacctttg |
252 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17559198 |
aacagctaagtttcttaatctcgattcttccaattggaccgcttttgtaggcacctttg |
17559256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 45 - 252
Target Start/End: Original strand, 14483524 - 14483734
Alignment:
| Q |
45 |
tggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatatccagta |
144 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||| ||||||| || |||||||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14483524 |
tggaataggagggtgattgccattaaagatgtagctaatgctttatactacatgcatcatgatcgctcaccttcaatagttcatcgcgatatatccagta |
14483623 |
T |
|
| Q |
145 |
agaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctc---ttttgt |
241 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
14483624 |
agaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttcttaatcccgataattccaattggacctctaattttgt |
14483723 |
T |
|
| Q |
242 |
aggcacctttg |
252 |
Q |
| |
|
||||||||||| |
|
|
| T |
14483724 |
aggcacctttg |
14483734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 14504746 - 14504965
Alignment:
| Q |
36 |
atgtttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgata |
135 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||| ||||||||| ||||||| || |||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
14504746 |
atgtttgattggaataagagggtgaaatccattaaagatgtagctaatgctttatactacatgcatcatgatcgctcacctgcaattgttcatcgcgata |
14504845 |
T |
|
| Q |
136 |
tatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctc |
235 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
14504846 |
tatcgagtaagaatattgttttggatttggaatatgtggctcatgtctcggatttcggaacagctaagtttcttaatcccgatgcttccaattggacctc |
14504945 |
T |
|
| Q |
236 |
t---tttgtaggcacctttg |
252 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
14504946 |
taactttgtaggcacgtttg |
14504965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 14468567 - 14468786
Alignment:
| Q |
36 |
atgtttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgata |
135 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||| | ||||||||| || ||| || |||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
14468567 |
atgtttgactggaataggagggtgaatgtcattaaggatgtagctaatgcactatactacatgcatcatgatcgctcaccatcaattgttcatcgcgata |
14468666 |
T |
|
| Q |
136 |
tatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctc |
235 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | || |||||||||||||||| |
|
|
| T |
14468667 |
tatccagtaagaatattgttttggatttggaatatgtggctcatgtctcagatttcggaacagctaagtttctcaatcccaatgcttccaattggacctc |
14468766 |
T |
|
| Q |
236 |
---ttttgtaggcacctttg |
252 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14468767 |
taattttgtaggcacctttg |
14468786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 15002874 - 15003087
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||| ||||||||| |||||||| ||| ||||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
15002874 |
tttgattggaataagagggtgaatatcattaaagatgtagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatatat |
15002973 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||| | |||| |||||| ||| ||||| |
|
|
| T |
15002974 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcgtccaatatgacttcttt |
15003073 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
15003074 |
tgcaggcacctttg |
15003087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 15033219 - 15033432
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
15033219 |
tttgattggaataggagggtggatgttattaaagatatagctaatgctttatgctatatgcatcatgattgttcaccttcaattgttcatcgcgatatat |
15033318 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||||||| ||| | |||| |||||| ||| ||||| |
|
|
| T |
15033319 |
ccagcaagaatgtcattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctcaatcccaattcatccaatatgacttcttt |
15033418 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
15033419 |
tgcaggcacttttg |
15033432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 14532090 - 14531877
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| | ||||||| |||||||| ||| | |||||||| ||||||||| | ||||||||||| ||||||| |
|
|
| T |
14532090 |
tttgattggaataggagggtgaatgtcattaaagatatagctaatgctttatgctatctacatcatgactgctcacctcctattgttcatcgagatatat |
14531991 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| || |||||||||||||| ||||||||| |||||||| ||| | | || |||||| ||| ||||| |
|
|
| T |
14531990 |
ccagcaagaatgttattttggatttggaatacgtagctcatgtctcagacttcggaacatccaagtttctgaatcccaactcatccaatatgacttcttt |
14531891 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
14531890 |
tgcaggcacctttg |
14531877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 15017882 - 15018095
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| | ||||||| || ||||| ||| ||||||||||||| || ||| | || |||||||| ||||||| |
|
|
| T |
15017882 |
tttgattggaataagagggtgaatattattaaagatatagctaatgccttatgctatctgcatcatgattgttcccctcctatagttcatcgagatatat |
15017981 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||| | |||| |||||| ||| ||||| |
|
|
| T |
15017982 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagattttggaacatctaagtttctaaatcccaattcatccaatatgacttcttt |
15018081 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
15018082 |
tgcaggcacctttg |
15018095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 15041354 - 15041521
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||| | ||||||| |||||||| ||| | ||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
15041354 |
tttgattggaatagaagggtgaatgtcattaaagatatagctaatgctttatgctatctacatcatgattgttcccctcctattgttcatcgagatatat |
15041453 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagttt |
206 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||||| |
|
|
| T |
15041454 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagttt |
15041521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 14521969 - 14521756
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||| | ||||||| ||||||| ||| | |||||||| ||||||||| | ||||||||||| ||||||| |
|
|
| T |
14521969 |
tttgattggagtaggagggtgaatatcattaaagatatagctaatgctttattctatctacatcatgactgctcacctcctattgttcatcgagatatat |
14521870 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||| |||||||||||||| || |||||| ||||||||| ||| | |||| || ||| ||| ||||| |
|
|
| T |
14521869 |
ccagcaagaatgttattttggatttggaatgtgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcatcgaatatgacttcttt |
14521770 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
14521769 |
tgcaggcacctttg |
14521756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 15011767 - 15011980
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| | ||||||| || |||| ||| |||||||||| ||||| ||| | ||||||||||| ||||||| |
|
|
| T |
15011767 |
tttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgttcatcgagatatat |
15011866 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||||||| ||| | |||| |||||| ||| ||||| |
|
|
| T |
15011867 |
ccagcaagaatgttattttggatttggaatatgtagctcatgtctcagactttggaacatctaagtttctaaatcccaattcatccaatatgacttcttt |
15011966 |
T |
|
| Q |
239 |
tgtaggcacctttg |
252 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
15011967 |
tgcaggcacctttg |
15011980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 15037786 - 15037955
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| ||| || ||| |||||| | | ||||||| |||||||| ||| ||||||||||||| || ||| | ||||||||||| ||||||| |
|
|
| T |
15037786 |
tttgattggaataagagagtgaatatcattaaggatatagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatatat |
15037885 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttct |
208 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||| |||||||||||||| || |||||| ||||||||| |
|
|
| T |
15037886 |
ccagcaagaatgttattttggatatggaatatgtagctcatgtctcagactttggaacatctaagtttct |
15037955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 17825443 - 17825242
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
17825443 |
tttgactggaataagagggtgaatgccattaaagatatagctaatgctgtatgttatatgcatcatcattgctcacctccaattgttcatcgagatatat |
17825344 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
| || |||||| | || | ||||||||||||| ||||||||||| || || |||| || |||| |||||||| ||||| ||||||||||||| || |
|
|
| T |
17825343 |
caagcaagaatatacttctaaatttggaatatgtggctcatgtctctgactttggaatagctaagcttcttaatcctgattcaaccaattggacctcatt |
17825244 |
T |
|
| Q |
239 |
tg |
240 |
Q |
| |
|
|| |
|
|
| T |
17825243 |
tg |
17825242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 14606671 - 14606841
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||| |||||| || |||||||| || ||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
14606671 |
tttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatatat |
14606770 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttctt |
209 |
Q |
| |
|
| || |||||| || || |||||| ||||| ||| | ||||||||| || || ||||||| |||| ||||| |
|
|
| T |
14606771 |
caagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttctt |
14606841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 16025848 - 16026018
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||| |||||| || |||||||| || ||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
16025848 |
tttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgagatatat |
16025947 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttctt |
209 |
Q |
| |
|
| || |||||| || || |||||| ||||| ||| | ||||||||| || || ||||||| |||| ||||| |
|
|
| T |
16025948 |
caagcaagaatattcttctggattcggaatgtgtgggtcatgtctctgactttggaacagctaagcttctt |
16026018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 17849295 - 17849440
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| | |||| |||| |||||||| ||||||||| ||| ||||||||||||||||| ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
17849295 |
tttgattggaataagcgggtgaatgtcattaaagatgtagctaatgctctatgttatatgcatcatcattgctcacctccgattgttcatcgagatatat |
17849394 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctc |
184 |
Q |
| |
|
| || |||||| | || | || ||||||||||| ||||||||||| |
|
|
| T |
17849395 |
caagcaagaatatacttctagacttggaatatgtagctcatgtctc |
17849440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 16173340 - 16173494
Alignment:
| Q |
55 |
gggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgt |
154 |
Q |
| |
|
|||| |||| |||||||| ||||||||| |||||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||| || |||||| || | |
|
|
| T |
16173340 |
gggtgaatgtcattaaagatgtagctaatgctttatgctatatgcaccatgattgctcgcctccaattgttcatcgagatatatcaagcaagaatattct |
16173439 |
T |
|
| Q |
155 |
tttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttctt |
209 |
Q |
| |
|
| |||||| |||| ||| ||||||||||| || || ||||||| |||| ||||| |
|
|
| T |
16173440 |
tctggattccgaatgtgtggctcatgtctctgactttggaacagctaagcttctt |
16173494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 15676422 - 15676253
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
||||||||||||| | |||| |||| ||||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
15676422 |
tttgattggaataagcgggtgaatgttattaaagatgtagctaatgctttatactatatgcaccatgattgctcacctccaattgttcatcgagatatat |
15676323 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttct |
208 |
Q |
| |
|
| || |||||| | | ||||||| |||||||| |||| ||||||||| || |||| || |||| |||| |
|
|
| T |
15676322 |
caagcaagaatatcctactggatttagaatatgtggctcgtgtctcagactttggaatagctaagcttct |
15676253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 16103655 - 16103826
Alignment:
| Q |
38 |
gtttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatata |
137 |
Q |
| |
|
|||||||||||| | ||| || |||| | |||||| ||||||||| |||||||| || ||||||||||||||||| ||| |||||||||| | |||||| |
|
|
| T |
16103655 |
gtttgattggaacaagagagtgaatgtccttaaagatgtagctaatgctttatgctacatgcatcatgattgctcgcctccaattgttcacagagatata |
16103754 |
T |
|
| Q |
138 |
tccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttctt |
209 |
Q |
| |
|
|| || |||||| || || ||||||| |||||||| |||| |||||| || || ||||||| |||| ||||| |
|
|
| T |
16103755 |
tcaagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttctt |
16103826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 15664587 - 15664377
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||| |||||| | |||||| |||| ||||||| | |||| || |||||||| |||||||| ||||||||| | ||| ||||||||||||| ||||||| |
|
|
| T |
15664587 |
tttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatat |
15664488 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
| || |||||| || || ||||||| |||||||| ||| ||||||||| || ||||| | |||| |||||||| |||| |||||||||||| || |
|
|
| T |
15664487 |
caagcaagaatattcttctggatttagaatatgtggcttgtgtctcagactttggaacggctaagcttcttaatcctaattcagacaattggacctcatt |
15664388 |
T |
|
| Q |
239 |
tgtaggcacct |
249 |
Q |
| |
|
|| |||||||| |
|
|
| T |
15664387 |
tgcaggcacct |
15664377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 31184536 - 31184591
Alignment:
| Q |
97 |
tgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgtt |
152 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||| ||||| |||||| |
|
|
| T |
31184536 |
tgcatcacgattgctcacctcctattgttcatcgtgatatatcgagtaaaaatgtt |
31184591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 31103456 - 31103570
Alignment:
| Q |
97 |
tgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaac |
196 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||||| || |||||| || || | || | || |||| ||||||||||| || || || || |
|
|
| T |
31103456 |
tgcatcatgattgctcacctcctattattcatcgtgatatatcgagcaagaatattcttctcaatcttgactatgaagctcatgtctccgactttgggac |
31103555 |
T |
|
| Q |
197 |
agttaagtttcttaa |
211 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
31103556 |
agctaagtttcttaa |
31103570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 31159647 - 31159701
Alignment:
| Q |
97 |
tgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgt |
151 |
Q |
| |
|
||||||||||||| || ||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
31159647 |
tgcatcatgattgttctcctcctattgttcatcgtgatatatcgagcaagaatgt |
31159701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 31241750 - 31241804
Alignment:
| Q |
97 |
tgcatcatgattgctcaccttcaattgttcatcgtgatatatccagtaagaatgt |
151 |
Q |
| |
|
||||||||||||| || ||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
31241750 |
tgcatcatgattgttctcctcctattgttcatcgtgatatatcgagcaagaatgt |
31241804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 13746 - 13536
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||| |||||| | |||||| |||| ||||||| | |||| || |||||||| |||||||| ||||||||| | ||| ||||||||||||| ||||||| |
|
|
| T |
13746 |
tttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatat |
13647 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgttgctcatgtctcagatttcggaacagttaagtttcttaatgtcgattcttccaattggacctcttt |
238 |
Q |
| |
|
| || |||||| || || ||||||| |||||||| |||| |||||| || || ||||||| |||| ||||| ||| |||| |||||||||||| || |
|
|
| T |
13646 |
caagcaagaatattcttctggatttagaatatgtggctcgtgtctcggactttggaacagctaagcttcttgatgctaattcagacaattggacctcatt |
13547 |
T |
|
| Q |
239 |
tgtaggcacct |
249 |
Q |
| |
|
|| |||||||| |
|
|
| T |
13546 |
tgcaggcacct |
13536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 4913 - 4780
Alignment:
| Q |
39 |
tttgattggaataggagggtaaatgccattaaaggtgtagctaacgctttatgttatatgcatcatgattgctcaccttcaattgttcatcgtgatatat |
138 |
Q |
| |
|
|||| |||||| | |||||| |||| ||||||| | |||| || |||||||| |||||||| ||||||||| | ||| ||||||||||||| ||||||| |
|
|
| T |
4913 |
tttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgagatatat |
4814 |
T |
|
| Q |
139 |
ccagtaagaatgttgttttggatttggaatatgt |
172 |
Q |
| |
|
| || |||||| || || ||||||| |||||||| |
|
|
| T |
4813 |
caagcaagaatattcttctggatttagaatatgt |
4780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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