View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16085_low_8 (Length: 245)
Name: NF16085_low_8
Description: NF16085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16085_low_8 |
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| [»] scaffold0603 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11495718 - 11495955
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11495718 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactgtcgaagagaatagagagggagcatcaat |
11495817 |
T |
|
| Q |
101 |
tggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11495818 |
tggctgataacatgtgagaatggaattatcattatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
11495917 |
T |
|
| Q |
201 |
cagttaaggaaggaagttggtcaggtatgtctcctctc |
238 |
Q |
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| T |
11495918 |
cagttaaggaaggaagattgtcaggtatgtctcctctc |
11495955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7489294 - 7489418
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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|||||||||| |||||||||||| |||||||| ||||||||||||| |||||||| | |||||||| |||| ||||||||||| |||||||| ||||||| |
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| T |
7489294 |
aaatttcaagatttttggtagacagtctgttgagaaagacgttagagatggaaagccgtctatggtcaactgtcgaagagaattgagagggaacatcaat |
7489393 |
T |
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| Q |
101 |
tggctgataacatgtgagaatggaa |
125 |
Q |
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| T |
7489394 |
tggttgaatacatctgacaatggaa |
7489418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2921506 - 2921424
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaat |
83 |
Q |
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| T |
2921506 |
aaatttcaaggttttccgtagaccatctgttgggagagacgtcagagatgggaagccttctatggtcaactgtcgaagagaat |
2921424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 5967794 - 5967715
Alignment:
| Q |
4 |
tttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaat |
83 |
Q |
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||||||||||||||| ||||| ||||||||||||||| | || ||||||| | |||||||| |||| ||| ||||||| |
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| T |
5967794 |
tttcaaggtttttgggagaccttctgttgggaaagacatcggagatggaaacccgtctatggtcaactgtcgcagagaat |
5967715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17313750 - 17313513
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaat |
100 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| | |||||| |||| | |||||||||||||||||||||||| | |
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| T |
17313750 |
aaatttcaaggtttttggtaaaccatctgttgggaaagacgtcagaaatggaaagtcgtatatggtcaactgtagaagagaatagagagggagcatcagt |
17313651 |
T |
|
| Q |
101 |
tggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaactcaagtt |
200 |
Q |
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|||||||| ||||| ||||| |||||||| || ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
17313650 |
tggctgattacatgagagaacggaattatagttatgaaattgctattatcatctgaatgtcttgactccaccagcaaaggatatcctcttaactcaagtt |
17313551 |
T |
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| Q |
201 |
cagttaaggaaggaagttggtcaggtatgtctcctctc |
238 |
Q |
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| T |
17313550 |
cagttaaggaaggaagtttgtcaggtatgtctcctctc |
17313513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 18390032 - 18389929
Alignment:
| Q |
4 |
tttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaattgg |
103 |
Q |
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||||||||||||||||||||| ||||| ||||||||| ||||| || |||| | ||||||||||| | ||||||||||| |||||| |||||||||||| |
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| T |
18390032 |
tttcaaggtttttggtagaccttctgtagggaaagacattagagattgaaaaccgtctatggtaaattgtcgaagagaattgagaggaagcatcaattgg |
18389933 |
T |
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| Q |
104 |
ctga |
107 |
Q |
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|||| |
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| T |
18389932 |
ctga |
18389929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5990504 - 5990468
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaa |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5990504 |
aaatttcaaggtttttggtagaccgtctgttgggaaa |
5990468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 5990352 - 5990323
Alignment:
| Q |
186 |
ctcttaactcaagttcagttaaggaaggaa |
215 |
Q |
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| T |
5990352 |
ctcttaactcaagttcagttaaggaaggaa |
5990323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16448760 - 16448682
Alignment:
| Q |
1 |
aaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaaga |
79 |
Q |
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||||||||||||||| ||||||||||||||||||||||| | || ||| |||| |||||||||| | || ||||||| |
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| T |
16448760 |
aaatttcaaggttttctgtagaccgtctgttgggaaagacatcggagatgaaaagccatctatggttagctgtcgaaga |
16448682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 2964 - 3043
Alignment:
| Q |
4 |
tttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaagagaat |
83 |
Q |
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||||||||||||||| |||||||||| |||||||||| | || ||||||| | | |||||| |||| ||||||||||| |
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| T |
2964 |
tttcaaggtttttggaagaccgtctggtgggaaagacatcggagatggaaaaccgtgtatggtcaactgtcgaagagaat |
3043 |
T |
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