View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16086_high_5 (Length: 417)
Name: NF16086_high_5
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16086_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 26553588 - 26553974
Alignment:
| Q |
19 |
tgatagaatggctgaaaagtgaagtgctttatttatagattatgtaaagtgataatttgattcgccatttgcttgcttgttgggtgaatcgacatttttt |
118 |
Q |
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| T |
26553588 |
tgatagaatggctgaaaagtgaagtgctttatttatagattatgtaaagtgataatttgattcgccatttgcttgcttgttgggtgaatcgacatttttt |
26553687 |
T |
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| Q |
119 |
cacctta--gtctttgcttggcaaaaagtattggaaaaaagagtaataaataatacaaggaatatcatttatgatctggtttcgaatatttagtgagttg |
216 |
Q |
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| T |
26553688 |
caccttaatgtctttgcttggcaaaaagtattggaaaaaagagtaataaataatacaaagaatatcatttatgatctggtttcgaatatttagtgagttg |
26553787 |
T |
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| Q |
217 |
tttcttaatagaaagcacataactgctgcaactaaattttcctacaaataggagtctatcagagtactttaagagactcaaaagcattcaagaatggcca |
316 |
Q |
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| T |
26553788 |
tttcttaatagaaagcacataactgctgctactaaattttcctacaaataggagtctatcagagtactttaagagactcaaaagcattctagaatggcca |
26553887 |
T |
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| Q |
317 |
catgatcagatgtgaacggtaatctaacagctaacaataaacacagccaccaaagtcatgaagttaaattctttcatgtaatttcaga |
404 |
Q |
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| T |
26553888 |
catgatcagatgtgaacggtaatctaacagctaacaataaacacagccaccaaagtcatgaagttaaattc-ttcatgtaatttcaga |
26553974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 36123762 - 36123794
Alignment:
| Q |
354 |
taaacacagccaccaaagtcatgaagttaaatt |
386 |
Q |
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| T |
36123762 |
taaacacagtcaccaaagtcatgaagttaaatt |
36123794 |
T |
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