View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16086_high_8 (Length: 245)
Name: NF16086_high_8
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16086_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 6817309 - 6817508
Alignment:
| Q |
11 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactata----agagaagacaaataattaaaaatggagaaatactctttaccttatac |
106 |
Q |
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| T |
6817309 |
tcctatgtgacatgacaaattgctagtttgtgaagatttctaaactatatataagagaagacaaataattaaaaatggagaaatactctttaccttatac |
6817408 |
T |
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| Q |
107 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccattga |
206 |
Q |
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| T |
6817409 |
cacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccattga |
6817508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 6809183 - 6809393
Alignment:
| Q |
20 |
acatgacaaattgctagtttgtgaagatttctaaactataagagaagacaaataattaaaaatggagaaatactctttaccttataccacttgtattccc |
119 |
Q |
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| T |
6809183 |
acatgacaaattgctagtttgtgaaaatttctaaattatagg-gagggtaaataactaaatatggagaaataatctttaccttataccacttgtattccc |
6809281 |
T |
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| Q |
120 |
actgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacg |
219 |
Q |
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| T |
6809282 |
actgcatttgcattgccgcaccaggtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacg |
6809381 |
T |
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| Q |
220 |
aaatgcagtttc |
231 |
Q |
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| T |
6809382 |
aaatgcagtttc |
6809393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 6831902 - 6832033
Alignment:
| Q |
97 |
taccttataccacttgtattcccactgcatttgcattgcagcaccaggtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
6831902 |
taccttataccacttgtattcccactgcatttgcattgcagcaccgggcacacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactg |
6832001 |
T |
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| Q |
197 |
ttaccattgatatcaacttgacgaaatgcagt |
228 |
Q |
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| T |
6832002 |
ttaccattgatatcaacttgacgaaatgcagt |
6832033 |
T |
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