View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16086_low_1 (Length: 475)
Name: NF16086_low_1
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16086_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 209 - 458
Target Start/End: Complemental strand, 26616141 - 26615892
Alignment:
| Q |
209 |
acgttgaatgcagtaatgtaattgtttcttagagaagcaacaacttaaaatggtagagttctattgttgtggactagtagtatagtgaagttaatatgag |
308 |
Q |
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| T |
26616141 |
acgttgaatgcagtaatgtaattgtttcttagagaagcaacaacttaaaatggtagagttctattgttgtgggctagtagtatagtgaagttaatatgag |
26616042 |
T |
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| Q |
309 |
aggttttttcggtgagaaaaatttgaagcattaatttcttatcaataactgtgtggggaccttaaattgatcaatgtgaaatgagatcttcaagctagct |
408 |
Q |
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| T |
26616041 |
aggttttttcggtgagaaaaattagaagcattaatttcttatcaataactgtgtggggaccttaaattgatcaatgtgaaatgagatcttcaagctagct |
26615942 |
T |
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| Q |
409 |
agctatagtacaatttcttgttttgtggtatagtatgtaataatattaat |
458 |
Q |
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| T |
26615941 |
agctatagtacaatttcttgttttgtggtatagtatgtaataatattaat |
26615892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26616348 - 26616191
Alignment:
| Q |
1 |
ttatacattgttgcctgtactcataataaattacaaattattaattaacctaatactnnnnnnnnnnttagtactaattttgtatgatcttaaatgatta |
100 |
Q |
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| T |
26616348 |
ttatacattgttgcctgtactcataataaattacaaattattaattaacctaatactaaaaaaaaa-ttagtactaattttgtatgatcttaaatgatta |
26616250 |
T |
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| Q |
101 |
tgggagggaaatgcttacttgagggtacccgtattcaggagtgtaggtagggtagctgc |
159 |
Q |
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| T |
26616249 |
tgggagggaaatgcttacttgagggtacccgtattcaggagtgtaggtagggtagctgc |
26616191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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