View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16086_low_2 (Length: 455)

Name: NF16086_low_2
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16086_low_2
NF16086_low_2
[»] chr3 (6 HSPs)
chr3 (16-438)||(36496706-36497128)
chr3 (69-166)||(36502332-36502428)
chr3 (104-151)||(36501618-36501665)
chr3 (119-165)||(35653122-35653167)
chr3 (120-172)||(2288429-2288480)
chr3 (110-146)||(5492251-5492287)
[»] chr8 (3 HSPs)
chr8 (75-140)||(36228536-36228601)
chr8 (75-140)||(32318075-32318140)
chr8 (82-165)||(7088901-7088983)
[»] chr1 (5 HSPs)
chr1 (106-146)||(26284645-26284685)
chr1 (105-140)||(19138872-19138907)
chr1 (127-172)||(47693970-47694014)
chr1 (76-140)||(13649499-13649563)
chr1 (110-166)||(15248876-15248931)
[»] chr5 (3 HSPs)
chr5 (104-146)||(39933456-39933498)
chr5 (104-146)||(39933559-39933601)
chr5 (82-166)||(22967147-22967230)
[»] chr4 (2 HSPs)
chr4 (104-165)||(49574078-49574139)
chr4 (106-166)||(46577503-46577563)
[»] chr6 (2 HSPs)
chr6 (120-172)||(8172950-8173002)
chr6 (104-163)||(30373077-30373135)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-140)||(139308-139343)
[»] chr2 (2 HSPs)
chr2 (104-163)||(3769332-3769390)
chr2 (82-166)||(44944038-44944121)
[»] scaffold0025 (1 HSPs)
scaffold0025 (104-146)||(150370-150412)
[»] chr7 (1 HSPs)
chr7 (104-133)||(17917127-17917156)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 36497128 - 36496706
Alignment:
Q  16 cagagacaagacggcggcgagagaagatcacaaggggttgaattgactatatgctgcacttttaataattaaataacacagtaaatactgatctaagggt 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36497128 cagagacgagacggcggcgagagaagatcacaaggggttgaattgactatatgctgcagttttaataattaaataacacagtaaatactgatctaagggt 36497029  T
Q  116 tgtgatttaaccctctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccacactccaaaatgatcaactgaacatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36497028 tgtgatttaaccctctcatctctcacaataacaaccactctcacttgatatatatatcatttatcatttaaccacactccaaaatgatcaactgaacatt 36496929  T
Q  216 gcgttgatgaatttaaagtatgacctgtttttgtaatgaaaccctatacttgaaatttgaaggcccagaaattgggtcctgatctatattctccattata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496928 gcgttgatgaatttaaagtatgacctgtttttgtaatgaaaccctatacttgaaatttgaaggcccagaaattgggtcctgatctatattctccattata 36496829  T
Q  316 tgctctatggatcgcacaatgtctgggaaggatcgtccataatctgctaaaacacgggagaacaagttatattcaaataacggcttgggatttaaacttc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496828 tgctctatggatcgcacaatgtctgggaaggatcgtccataatctgctaaaacacgggagaacaagttatattcaaataacggcttgggatttaaacttc 36496729  T
Q  416 tttgaatgatgtataagtaataa 438  Q
    ||||||||||| |||||||||||    
T  36496728 tttgaatgatgaataagtaataa 36496706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 36502332 - 36502428
Alignment:
Q  69 ctgcacttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 166  Q
    ||||| |||| | ||||||||| ||||||||| | | ||| || ||||  |||| ||||||||||||||||||||||| |||  ||||||||||||||    
T  36502332 ctgcaatttttaaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataa-aactcctctcacttgatat 36502428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 36501618 - 36501665
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataacaacc 151  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||||    
T  36501618 tgatccaagggttgtgacttaatcctctcatctctcacaataaaaacc 36501665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 35653167 - 35653122
Alignment:
Q  119 gatttaaccctctcatctctcacaataacaaccactctcacttgata 165  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||    
T  35653167 gatttaaccctctcatctctcacaataa-aactcctctcacttgata 35653122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 2288429 - 2288480
Alignment:
Q  120 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 172  Q
    ||||||||||||||||||||||||||| |||  |||| | |||||||||||||    
T  2288429 atttaaccctctcatctctcacaataa-aactcctcttatttgatatatatat 2288480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 5492251 - 5492287
Alignment:
Q  110 aagggttgtgatttaaccctctcatctctcacaataa 146  Q
    |||||||||||||||||||||||| |||||| |||||    
T  5492251 aagggttgtgatttaaccctctcacctctcataataa 5492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 36228601 - 36228536
Alignment:
Q  75 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 140  Q
    |||||| | |||| ||||||| |||| | |||||||||||||||||||| ||||||||||||||||    
T  36228601 ttttaaaatttaagtaacacaataaagattgatctaagggttgtgatttcaccctctcatctctca 36228536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 32318140 - 32318075
Alignment:
Q  75 ttttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 140  Q
    |||||| |||||| ||||||| || | | ||||| ||||||||| |||||||||||||||||||||    
T  32318140 ttttaaaaattaagtaacacaatatagattgatccaagggttgtaatttaaccctctcatctctca 32318075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7088983 - 7088901
Alignment:
Q  82 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 165  Q
    ||||||||| || |||||  | ||||| ||||| |||||||||  ||||||| |||||| ||||| ||||||||||||||||||    
T  7088983 aattaaatatcatagtaatgattgatccaagggctgtgatttactcctctcacctctcataataa-aaccactctcacttgata 7088901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 26284685 - 26284645
Alignment:
Q  106 atctaagggttgtgatttaaccctctcatctctcacaataa 146  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  26284685 atctaagggttgtgatttaaccctctcatctctcataataa 26284645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 19138907 - 19138872
Alignment:
Q  105 gatctaagggttgtgatttaaccctctcatctctca 140  Q
    |||| |||||||||||||||||||||||||||||||    
T  19138907 gatccaagggttgtgatttaaccctctcatctctca 19138872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 47694014 - 47693970
Alignment:
Q  127 cctctcatctctcacaataacaaccactctcacttgatatatatat 172  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||    
T  47694014 cctctcatctctcacaataa-aactcctctcacttgatatatatat 47693970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 13649499 - 13649563
Alignment:
Q  76 tttaataattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctca 140  Q
    ||||| |||||| ||||||| | || |  |||| |||||||||||||||||||| ||||||||||    
T  13649499 tttaaaaattaagtaacacaattaagatggatccaagggttgtgatttaaccctatcatctctca 13649563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 15248931 - 15248876
Alignment:
Q  110 aagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 166  Q
    ||||||| ||||||||||||||||||||||||  ||| || | ||||||||||||||    
T  15248931 aagggttatgatttaaccctctcatctctcactgtaa-aagccctctcacttgatat 15248876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 39933498 - 39933456
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataa 146  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  39933498 tgatcaaagggttatgatttaaccctctcatctctcacaataa 39933456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 39933559 - 39933601
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataa 146  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||    
T  39933559 tgatccaagggttatgatttaaccctcttatctctcacaataa 39933601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 22967147 - 22967230
Alignment:
Q  82 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 166  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || | ||||||||||||||    
T  22967147 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaac-ctctcacttgatat 22967230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 49574139 - 49574078
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgata 165  Q
    |||||||||||||||||||||||||||||| ||||||   ||| |||  |||||||||||||    
T  49574139 tgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgata 49574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 46577563 - 46577503
Alignment:
Q  106 atctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 166  Q
    |||||||||||  |||| |||||||||| |||||| ||||| || ||||||||||||||||    
T  46577563 atctaagggttaggattcaaccctctcacctctcataataaaaagcactctcacttgatat 46577503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 8173002 - 8172950
Alignment:
Q  120 atttaaccctctcatctctcacaataacaaccactctcacttgatatatatat 172  Q
    |||| ||||||||||||||||| |||| || | ||||||||||||||||||||    
T  8173002 atttcaccctctcatctctcaccataaaaatctctctcacttgatatatatat 8172950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 30373077 - 30373135
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 163  Q
    ||||| ||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||||    
T  30373077 tgatccaagggttgtaatttaacactctcatctctcataataaaaacc-ctctcacttga 30373135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 139308 - 139343
Alignment:
Q  105 gatctaagggttgtgatttaaccctctcatctctca 140  Q
    |||| |||||||||||||||||||||||||||||||    
T  139308 gatccaagggttgtgatttaaccctctcatctctca 139343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 3769332 - 3769390
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 163  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||| |||||||||||    
T  3769332 tgatccaagggttgtaacttaacactctcatctctcacaataaaaacc-ctctcacttga 3769390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 44944038 - 44944121
Alignment:
Q  82 aattaaataacacagtaaatactgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttgatat 166  Q
    ||||||| |||||| |||| | | |||||| |||   ||| |||||||||||||||||||||||| || || |||||||||||||    
T  44944038 aattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaaca-tctcacttgatat 44944121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 150412 - 150370
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctcatctctcacaataa 146  Q
    ||||| ||||||| || ||||||||||||||||||||||||||    
T  150412 tgatcgaagggttatggtttaaccctctcatctctcacaataa 150370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 133
Target Start/End: Complemental strand, 17917156 - 17917127
Alignment:
Q  104 tgatctaagggttgtgatttaaccctctca 133  Q
    ||||||||||||||||||||||||||||||    
T  17917156 tgatctaagggttgtgatttaaccctctca 17917127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University