View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16086_low_3 (Length: 447)
Name: NF16086_low_3
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16086_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 26886014 - 26886390
Alignment:
| Q |
17 |
aatatgagcattatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaagaaaaaacaatgattattgtaatg |
116 |
Q |
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| T |
26886014 |
aatatgagcattattggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaa-aaaaagcaatgattattgtaatg |
26886112 |
T |
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| Q |
117 |
tagcaagatcattaaaagaaagagagaaagggaatttgagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaac |
216 |
Q |
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| T |
26886113 |
tagcaagatcattaaaagaaagagagaaaaggaattggagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaac |
26886212 |
T |
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| Q |
217 |
cttaagagcagctttctttgtctgtatatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagt |
316 |
Q |
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| T |
26886213 |
cttaagagcagctttctttgtctgtaaatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagt |
26886312 |
T |
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| Q |
317 |
tccggatccggctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
394 |
Q |
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| T |
26886313 |
tccggatccggctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
26886390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 26631216 - 26631080
Alignment:
| Q |
129 |
taaaagaaagagagaaagggaatttgagagttgaatagaatacaata-----ccagtagtataagataaaagagcaacaacagaagaagaaaccttaaga |
223 |
Q |
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| T |
26631216 |
taaaagaaagagagaaagggaattggaaagttgaatagaatagaataaaataccagtagtataagataaaagagcaacaacagaagaagaagccttgaga |
26631117 |
T |
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| Q |
224 |
gcagctttctttgtctgtatatccagaaagacattat |
260 |
Q |
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| T |
26631116 |
gcagctttctttgtatttacatccagataggcattat |
26631080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 26631318 - 26631252
Alignment:
| Q |
17 |
aatatgagcattatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccct |
83 |
Q |
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|||||||||||||| |||||||||||||| ||| ||||| ||||||||||| || |||||||||||| |
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| T |
26631318 |
aatatgagcattattggcatcattttcaatgataacaccagaacattgattaaactcttggtcccct |
26631252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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