View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16086_low_6 (Length: 396)
Name: NF16086_low_6
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16086_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 117 - 380
Target Start/End: Original strand, 21016045 - 21016308
Alignment:
| Q |
117 |
agagagacatacgagctgacctcaggtgcgcgtgaaacaggaaaagcgacagtaagggattgagagagagctgttggtgcatgacagaaaatgcagaaag |
216 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21016045 |
agagagatatatgagctgacctcaggtgcgcgtgaaacaggaaaagcgacggtaagggattgagagagagctgttggtgcatgacagaaaatatagaaag |
21016144 |
T |
|
| Q |
217 |
aaagagcagctgaaaagccaaatctaaaagcactttttgcagctgattcaattttgtccactaccactaccttattcacctccttctcttcaacctcaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21016145 |
aaagagcagctgaaaagccaaatctaaaagcactttttgcagctgattcaattttttccactaccactaccttattcacctccttctcttcaacctcaaa |
21016244 |
T |
|
| Q |
317 |
cgacaccttcctcttccgtgatgcccatgttgttgtcggtagtaaccataacctacgaggaaac |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
21016245 |
cgacaccttcctcttccgtgatgcccatgttgttgttggttgtaaccataacctatgaggaaac |
21016308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 21015857 - 21015952
Alignment:
| Q |
17 |
ttctaacacacttttctattgcgtggcttttacactttgaaaacttgttccacatacagtggaaaaaagtgttcgtggcatttcttatcataagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21015857 |
ttctaacacacttttctattgcgtggcttttacactttgaaaacttgttctacatacagtggaaaaaagtgttcgtgacatttcttatcataagag |
21015952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University