View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16086_low_8 (Length: 297)

Name: NF16086_low_8
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16086_low_8
NF16086_low_8
[»] chr5 (3 HSPs)
chr5 (184-281)||(36538923-36539020)
chr5 (13-108)||(36539096-36539191)
chr5 (13-46)||(4273521-4273554)
[»] chr3 (1 HSPs)
chr3 (15-46)||(21574380-21574411)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 36539020 - 36538923
Alignment:
Q  184 catacctgcacttgtgctgaaccttgatcagaaaccttaacaggaccaaaccaaatactactatactcataagaccaatccaaactcatattacaact 281  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36539020 catacctgaacttgtgctgaaccttgatcagaaaccttaacaggaccaaaccaaatactactatactcataagaccaatccaaactcatattacaact 36538923  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 36539191 - 36539096
Alignment:
Q  13 aattatactataagcacttaattaagtagtttattctatcagggcctaaaccacaatcataaatagattatgtttctattagcaacacaatttttc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36539191 aattatactataagcacttaattaagtagtttattctatccgggcctaaaccacaatcataaatagattatgtttctattagcaacacaatttttc 36539096  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 4273521 - 4273554
Alignment:
Q  13 aattatactataagcacttaattaagtagtttat 46  Q
    ||||||||||||||||||||||||||| ||||||    
T  4273521 aattatactataagcacttaattaagttgtttat 4273554  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 21574411 - 21574380
Alignment:
Q  15 ttatactataagcacttaattaagtagtttat 46  Q
    ||||||||||||||||||||||||||||||||    
T  21574411 ttatactataagcacttaattaagtagtttat 21574380  T

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