View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16086_low_9 (Length: 250)

Name: NF16086_low_9
Description: NF16086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16086_low_9
NF16086_low_9
[»] chr5 (2 HSPs)
chr5 (31-240)||(26885788-26885997)
chr5 (167-240)||(26631508-26631581)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 26885997 - 26885788
Alignment:
Q  31 atctccttcaacgtcctcgtgaaaaaggtctcctggacgatactttggcagatagtcttaaggttggttcgtgtttatttataacttgatgattaggcag 130  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26885997 atctccttcggcgtcctcgtgaaaaaggtctcctggacgatactttggcagatagtcttaaggttggttcgtgtttatttataaattgatgattaggcag 26885898  T
Q  131 gcattgcatctgcattatagtcaagatgactatgatgttttattcttcttcgtaggttatcgtatacctgtatgacggtggatcatatgtgggagaagta 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  26885897 gcattgcatctgcatcatagtcaagatgactatgatgttttattcttcttcgtaggttatcgtatacctgtatgatggtggatcatatgtaggagaagta 26885798  T
Q  231 tgtgcctatg 240  Q
    ||||||||||    
T  26885797 tgtgcctatg 26885788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 26631508 - 26631581
Alignment:
Q  167 gttttattcttcttcgtaggttatcgtatacctgtatgacggtggatcatatgtgggagaagtatgtgcctatg 240  Q
    |||||||||||||| ||||||||   ||| ||||||||||||| ||||||| | |||| ||||| |||||||||    
T  26631508 gttttattcttctttgtaggttaagatattcctgtatgacggtcgatcatacgagggacaagtacgtgcctatg 26631581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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