View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16087_high_2 (Length: 459)
Name: NF16087_high_2
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 32616412 - 32616623
Alignment:
| Q |
1 |
aggctgtagatgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32616412 |
aggctgtagatgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgatggcttcac |
32616511 |
T |
|
| Q |
101 |
caaatggataaactcaaattctagtaaagcaggaagctcaaaatcttcttctcatgaaactcatcaagtatttcccttattcctttactcaataacttga |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616512 |
caaatggataaactcaaattctagtaaaccaggaagctcaaaatcttcttctcatgaaactcatcaagtatttcccttattcctttactcaataacttga |
32616611 |
T |
|
| Q |
201 |
catattcactaa |
212 |
Q |
| |
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|||||||||||| |
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| T |
32616612 |
catattcactaa |
32616623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 211 - 442
Target Start/End: Original strand, 32616699 - 32616935
Alignment:
| Q |
211 |
aatattagaaacatggatactacctacattctcaaatttagaagcatggatactaaattgactaaaattgcatttaaaccaatttcttccattttttcta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32616699 |
aatattagaaacatggatactacctacattctcaaatttagaaacatggatactaaattgactaaaattgcatttaaaccaatttcttccatttttgcta |
32616798 |
T |
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| Q |
311 |
cacttga------tcaataacaaaatttgtttacaaatggtatatgaatgattctttattagacatgggaagatgttgagaaggtaatggaagagaatca |
404 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616799 |
cacttgaacttgatcaataa-aaaatttgtttacaaatggtatatgaatgattgtttattagacatgggaagatgttgagaaggtaatggaagagaatca |
32616897 |
T |
|
| Q |
405 |
aaccaaaggggtgactgcatggttagaagctatagcat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32616898 |
aaccaaaggggtgactgcatggttagaagctatagcat |
32616935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 32635536 - 32635615
Alignment:
| Q |
363 |
ttagacatgggaagatgttgagaaggtaatggaagagaatcaaaccaaaggggtgactgcatggttagaagctatagcat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32635536 |
ttagacatgggaagatgttgagaaggtaatggaagagaatcaaaccaaaggggtgactgcatggttagaagctatagcat |
32635615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 32634824 - 32635025
Alignment:
| Q |
11 |
tgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcaccaaatggata |
110 |
Q |
| |
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|||||||||||||||| ||||| ||||||| | |||||||| |||| ||||||||| |||||||||| |||||||||||| || | ||| ||| |||| |
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| T |
32634824 |
tgcagaggaagcagtcacaaaattccttcaagttcttgatgtcaacggagacaatgaaattagtgagactgaatttgttgatggtataaccgaattgata |
32634923 |
T |
|
| Q |
111 |
aactcaaattctagtaaagcaggaagctcaaaatcttcttc---tcatgaaactcatcaagtatttcccttattcctttactc-aataacttgacatatt |
206 |
Q |
| |
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|||||| ||| | | ||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
32634924 |
aactcatattttggacaagatgctagctcaaaatctccttctcatcatgaaactcatcaagtatttcccttattcctttactcaaatatcttgtcatatt |
32635023 |
T |
|
| Q |
207 |
ca |
208 |
Q |
| |
|
|| |
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|
| T |
32635024 |
ca |
32635025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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