View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16087_high_4 (Length: 425)
Name: NF16087_high_4
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 2 - 425
Target Start/End: Original strand, 6863741 - 6864164
Alignment:
| Q |
2 |
catcaagaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggc |
101 |
Q |
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| T |
6863741 |
catcaagaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggc |
6863840 |
T |
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| Q |
102 |
taggctgcgaatgagcgaatggtccaacggcttgcagaaacgtgcatccaccaccgttacacgcaagccatgatcctccagcatggaggctgcagctaca |
201 |
Q |
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| T |
6863841 |
taggctgcgaatgagtgaatggtccaacggcttgcagaaacgtgcatccgccaccgttacacgcaagccatgatcctccagcatggaggctgcagctaca |
6863940 |
T |
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| Q |
202 |
cagttctgaacagctgttccaaaacccaaaagtgacactctttccccttcaatcagtatcctaccttttccaatctgttaatatgtcataacattaaatg |
301 |
Q |
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| T |
6863941 |
cagttctgaacagctgttccaaaacccaaaagtgccactctttccccttcaatcagtatcctaccttttccaatctgttaatgtgtcataacattaaatg |
6864040 |
T |
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| Q |
302 |
ttcgcttcatttgccaaaactgtttaaagagaaatgctagcaatagacaatctaacacagttatttagtggaatccaagtgaatttattctaatattaga |
401 |
Q |
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| T |
6864041 |
ttcacttcatttgccaaaactgtttaaagagaaatgctagcaatacacaatctaacatagttatttagtggaatccaagtgaatttattctaatattaga |
6864140 |
T |
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| Q |
402 |
taaaggattcgtgttaaaaatgac |
425 |
Q |
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| T |
6864141 |
taaaggattcgtgttaaaaatgac |
6864164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 49148744 - 49148463
Alignment:
| Q |
13 |
ccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttcttccacagtgatcaaaacctcgtgtgatttggctaggctgcgaa |
112 |
Q |
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| T |
49148744 |
ccatcaagggccatgaactgagcaacatgagaaccaaatcctccaattgatccttcttctacggtgatcagaacctcgtgtgatttggccagactgcgaa |
49148645 |
T |
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| Q |
113 |
tgagcgaatggtccaacggcttgcagaaacgtgcatccaccaccgttacacgcaagccatgatcctccagcatggaggctgcagctacacagttctgaac |
212 |
Q |
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| T |
49148644 |
tcaaggatcgatccaatggcttgcagaaacgtgcatcagcaacggttaagcgcaagccatgttgttcaactaaggaagccgcggccaaacagttctgaac |
49148545 |
T |
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| Q |
213 |
agctgttccaaaacccaaaagtgacactctttccccttcaatcagtatcctaccttttccaatctgttaatatgtcataaca |
294 |
Q |
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| T |
49148544 |
ggctgatccgtagcccaatagggctactctttccccttcaattagtatcctacctttcccaatctgttaaaatatcataaca |
49148463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 49712655 - 49712716
Alignment:
| Q |
7 |
agaagaccatcaagggccatgaactgagcaacatgagaaccaaatcctcctattgatccttc |
68 |
Q |
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| T |
49712655 |
agaagtccatcaagagcaataaattgagcaacatgggaaccaaatcctccaatagatccttc |
49712716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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