View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16087_high_7 (Length: 324)
Name: NF16087_high_7
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 32616436 - 32616121
Alignment:
| Q |
1 |
actgcttcctctgcatctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttattgccatcgccatcaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32616436 |
actgcttcctctgcatctacagccttaccaaaatgagtctccctaactactttctctaactcggatcttgaaacatggttatcgccatcgccatcaactt |
32616337 |
T |
|
| Q |
101 |
gctcaaataacctattgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatactgtcatacgtgtaat--------taaatatgcaga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32616336 |
gctcaaataacctattgcatcacaaggagcaagaaaacactcataaaaaacatatttatatatattgtcatacgtgtaatcaaagatataaatatgcaga |
32616237 |
T |
|
| Q |
193 |
ccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccagaaataagttgtccc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32616236 |
ccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccggaaataagttgtccc |
32616137 |
T |
|
| Q |
293 |
ttcaattcacgttctt |
308 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32616136 |
ttcaattcacgttctt |
32616121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 32634615 - 32634488
Alignment:
| Q |
181 |
taaatatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccagaa |
280 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
32634615 |
taaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaaccctatcactctgagcatgacttaagactccagaa |
32634516 |
T |
|
| Q |
281 |
ataagttgtcccttcaattcacgttctt |
308 |
Q |
| |
|
||||| ||| | ||||||||||| |||| |
|
|
| T |
32634515 |
ataagatgttctttcaattcacgctctt |
32634488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University