View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16087_high_9 (Length: 305)

Name: NF16087_high_9
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16087_high_9
NF16087_high_9
[»] chr4 (4 HSPs)
chr4 (14-305)||(54396509-54396800)
chr4 (15-305)||(23587525-23587815)
chr4 (15-305)||(23596377-23596667)
chr4 (15-89)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (15-305)||(8102753-8103043)
chr7 (14-304)||(8017204-8017494)
chr7 (15-163)||(39985874-39986022)
chr7 (15-85)||(7877525-7877595)
chr7 (15-136)||(8602229-8602350)
chr7 (15-135)||(8590894-8591014)
chr7 (18-89)||(17260543-17260614)
chr7 (15-89)||(10494166-10494240)
chr7 (24-85)||(8382677-8382738)
chr7 (18-61)||(6789842-6789885)
chr7 (15-89)||(3147574-3147648)
chr7 (18-148)||(8585501-8585631)
chr7 (15-85)||(8636135-8636205)
chr7 (15-89)||(13333248-13333322)
chr7 (18-58)||(1301797-1301837)
chr7 (14-58)||(8659696-8659740)
[»] chr2 (6 HSPs)
chr2 (15-151)||(17716485-17716621)
chr2 (93-226)||(5445621-5445754)
chr2 (15-84)||(12234996-12235065)
chr2 (15-82)||(12245198-12245265)
chr2 (17-61)||(7542556-7542600)
chr2 (15-85)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (14-85)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 54396800 - 54396509
Alignment:
Q  14 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396800 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 54396701  T
Q  114 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396700 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 54396601  T
Q  214 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396600 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgat 54396509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 23587525 - 23587815
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  115 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 214  Q
    ||||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaac 23587724  T
Q  215 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgat 305  Q
    ||| |||||||| || ||||||||||| ||||| ||||| || || |||||||| ||||||||||| ||| | || |||||||||||||||    
T  23587725 ttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctggtgatacacatttgggaggtgaagattttgat 23587815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 23596377 - 23596667
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||| ||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  115 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 214  Q
    |||| ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaac 23596576  T
Q  215 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgat 305  Q
    ||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||| | || |||||||||||||||    
T  23596577 ttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgat 23596667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 35132824 - 35132750
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 89  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 8103043 - 8102753
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||| ||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaatta 8102944  T
Q  115 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 214  Q
    |||||||||| ||||||||||| ||||| || ||| | || || || ||  | ||    || ||  |||||||| | || ||||| ||||| ||||| ||    
T  8102943 ttaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtac 8102844  T
Q  215 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgat 305  Q
    ||| ||||| || ||||||||||||||||| || || || ||||| || |||||||| |||||||| ||||||||||||||||||||||||    
T  8102843 ttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcaggtgatacccatcttggtggtgaagattttgat 8102753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 8017204 - 8017494
Alignment:
Q  14 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 113  Q
    ||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||  ||| | ||  | ||||| ||||| |||    
T  8017204 gaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatgttttgagaatt 8017303  T
Q  114 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 213  Q
    || || ||||| || ||||| || ||||| || ||  | || || || ||| | ||    |||||  |||| ||| | || ||||||||||||||||| |    
T  8017304 atcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgttgatctttgacttgggaggtggta 8017403  T
Q  214 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttga 304  Q
    |||| ||||| |||||||||||||||||||| || || || ||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  8017404 cttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttga 8017494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 39986022 - 39985874
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||||||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  || | ||||    
T  39986022 aagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaatta 39985923  T
Q  115 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagc 163  Q
    | |||||||| ||||||||||| |||||||||||| | || ||||||||    
T  39985922 tcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagc 39985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 7877525 - 7877595
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 85  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 8602350 - 8602229
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||  |||| || |||||||||||||| ||| | ||| | |||||  || |||| |    
T  8602350 aagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataa 8602251  T
Q  115 ttaatgagcctactgctgctgc 136  Q
    | |||||||| ||||| |||||    
T  8602250 tcaatgagccaactgcagctgc 8602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 8591014 - 8590894
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||  ||| | || ||||||||  || |||| |    
T  8591014 aagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataa 8590915  T
Q  115 ttaatgagcctactgctgctg 135  Q
    ||||||| || ||||| ||||    
T  8590914 ttaatgaaccaactgccgctg 8590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 17260614 - 17260543
Alignment:
Q  18 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 89  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttatt 17260543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 10494166 - 10494240
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 89  Q
    |||||||||||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494166 aagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 8382677 - 8382738
Alignment:
Q  24 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 85  Q
    |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  18 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 61  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 3147648 - 3147574
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 89  Q
    |||||||| |||||||| || |||||||||||||||||| |||| ||  |||| || | ||||||||||| ||||    
T  3147648 aagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttatt 3147574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 8585501 - 8585631
Alignment:
Q  18 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatta 117  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||  |||| || |  ||||||||||| ||| | ||  | |||||  ||||||| || |    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  118 atgagcctactgctgctgcaattgcttatgg 148  Q
    |||| || |||||||| || ||||| |||||    
T  8585601 atgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 8636135 - 8636205
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 85  Q
    |||||||| ||  ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636135 aagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 13333248 - 13333322
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 89  Q
    |||||||| ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333248 aagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1301837 - 1301797
Alignment:
Q  18 aatgctgttgttactgttcctgcttatttcaatgattctca 58  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  1301837 aatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 8659740 - 8659696
Alignment:
Q  14 gaagaatgctgttgttactgttcctgcttatttcaatgattctca 58  Q
    |||||||||||||||||| || ||||| || ||||||||||||||    
T  8659740 gaagaatgctgttgttacagtgcctgcatagttcaatgattctca 8659696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 17716485 - 17716621
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 114  Q
    |||||||| ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||| ||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  115 ttaatgagcctactgctgctgcaattgcttatggttt 151  Q
    |||||||||| |||||||| || ||||||||||||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttt 17716621  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 5445621 - 5445754
Alignment:
Q  93 ggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgctta 192  Q
    ||||| |||||| ||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |||| ||||||     
T  5445621 ggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttg 5445720  T
Q  193 tttttgacttgggaggtggaactttcgatgtttc 226  Q
    | |||||  | || |||||||| |||||||||||    
T  5445721 tgtttgatcttggtggtggaacattcgatgtttc 5445754  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 12235065 - 12234996
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 84  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235065 aagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 12245198 - 12245265
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 82  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7542600 - 7542556
Alignment:
Q  17 gaatgctgttgttactgttcctgcttatttcaatgattctcaacg 61  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542600 gaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 16657309 - 16657379
Alignment:
Q  15 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 85  Q
    |||||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | ||||||||||||    
T  16657309 aagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgc 16657379  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 4678349 - 4678420
Alignment:
Q  14 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 85  Q
    ||||||||  ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678349 gaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

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