View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16087_low_10 (Length: 227)
Name: NF16087_low_10
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 17543261 - 17543467
Alignment:
| Q |
1 |
tattcatatgttaaaggaaagagaggacgtccatgcacaaaacatgagaaaggttcattcttctattcatatcatggtatggggttaaggcaataaagtg |
100 |
Q |
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| T |
17543261 |
tattcatatgttaaaggaaagagacgacgttcatgcacaaaacatgagaaaggttcattcttctattcatatcatggtatggggttaaggcaataaagtg |
17543360 |
T |
|
| Q |
101 |
aaattattgttgatgattctttgaagacaaagatgtatggttattgaataacattcaagggtacaggaagagagaagaaagaaagtaattattttcctta |
200 |
Q |
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| T |
17543361 |
aaattgttgttgatgattctttgaagacaaagatgtatggttattgaataacattcaagggtacaggaagagag----aagaaagtaattcttttcctta |
17543456 |
T |
|
| Q |
201 |
aatgagagaaa |
211 |
Q |
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||||||||||| |
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| T |
17543457 |
aatgagagaaa |
17543467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 1193319 - 1193166
Alignment:
| Q |
1 |
tattcatatgttaaaggaaagagaggacgtccatgcacaaaacatgagaaaggttcattcttctattcatatcatggtatggggttaaggcaataaagtg |
100 |
Q |
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| T |
1193319 |
tattcatatgtcaaagaaaagaggggacgtgcatgtaccaaaaatgggaaaggaccattctcctattcaaattatagtatggggttaaggcaacaaggtg |
1193220 |
T |
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| Q |
101 |
aaattattgttgatgattctttgaaga-caaagatgtatggttattgaataaca |
153 |
Q |
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| T |
1193219 |
gaattgttgttgatgattccttgaagaccagagatgcatggtaatggaataaca |
1193166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 12932306 - 12932384
Alignment:
| Q |
82 |
gggttaaggcaataaagtgaaattattgttgatgattctttgaaga-caaagatgtatggttattgaataacattcaag |
159 |
Q |
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|||| |||| ||||||||| ||||||||||||| |||| ||||||| |||||||||||||| |||||| |||||||||| |
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| T |
12932306 |
gggtcaaggtaataaagtggaattattgttgataattccttgaagaccaaagatgtatggtaattgaaaaacattcaag |
12932384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 32450855 - 32450932
Alignment:
| Q |
82 |
gggttaaggcaataaagtgaaattattgttgatgattctttgaaga-caaagatgtatggttattgaataacattcaag |
159 |
Q |
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|||| |||| ||||||||| ||||||||||||| |||| ||||||| |||||||||||||| |||||| |||||||||| |
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| T |
32450855 |
gggtcaaggtaataaagtggaattattgttgataattccttgaagaccaaagatgtatggtgattgaa-aacattcaag |
32450932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 52016501 - 52016423
Alignment:
| Q |
82 |
gggttaaggcaataaagtgaaattattgttgatgattctttgaagac-aaagatgtatggttattgaataacattcaag |
159 |
Q |
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||||||||| ||| |||| ||||| || ||||||||| |||||||| ||||||||||||| ||||||||||||||||| |
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| T |
52016501 |
gggttaaggtaatcaagttgaattactgatgatgattccttgaagactaaagatgtatggtaattgaataacattcaag |
52016423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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