View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16087_low_13 (Length: 221)
Name: NF16087_low_13
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 28296681 - 28296478
Alignment:
| Q |
1 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
100 |
Q |
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| T |
28296681 |
ggtaggcctaatatttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
28296582 |
T |
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| Q |
101 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaatagcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
28296581 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccaatggtgattttgaggtgttcaatgatgtgttggattcacttcttaatagcaacaa |
28296482 |
T |
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| Q |
201 |
tatt |
204 |
Q |
| |
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|||| |
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| T |
28296481 |
tatt |
28296478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28331222 - 28331032
Alignment:
| Q |
1 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
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| T |
28331222 |
ggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccagttacatgaagaagttatgtgata |
28331123 |
T |
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| Q |
101 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaa |
191 |
Q |
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| T |
28331122 |
tttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgtgcaatgatgtgttagattcacttcttaa |
28331032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 28304568 - 28304368
Alignment:
| Q |
1 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
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| T |
28304568 |
ggtaagcctaatgtttcagatttctttccaattcttcgtccctttgatccacaaggtgtgcatgcaaagatgaccagttacatgaagaagttatgtgata |
28304469 |
T |
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| Q |
101 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaatagcaacaa |
200 |
Q |
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| T |
28304468 |
ttttttatggaattattgaagaaagaatttgttcaagagcttccaaagctg---atgaggtttgcaatgatgggttagattcacttctcaataacaacaa |
28304372 |
T |
|
| Q |
201 |
tatt |
204 |
Q |
| |
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|||| |
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|
| T |
28304371 |
tatt |
28304368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 28310169 - 28309978
Alignment:
| Q |
1 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||| ||| |||||| ||| |||||||||||||| | |
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| T |
28310169 |
ggtaagcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaagaatacacgcaaggattaccaatcatatgaaaaagttgtgtgaga |
28310070 |
T |
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| Q |
101 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaat |
192 |
Q |
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||||| ||||||| ||||||||||||||| ||||||||| |||| || ||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
28310069 |
tttttgatggaataattgaagaaagaattagttcaagagattccaattctgattctaaggtgtgcaatgatgtgttagattcacttcttaat |
28309978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28320740 - 28320551
Alignment:
| Q |
1 |
ggtaggcctaatgtttcagatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatgaccaattgtataaaaaagttgtgtgata |
100 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||| ||| || ||||||||||| | |
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| T |
28320740 |
ggtaagcctaatatttcagatttctttccaattcttcgtcccttagatccacaaggtttgtatgcaaggatgaccaatcatatgaagaagttgtgtgaga |
28320641 |
T |
|
| Q |
101 |
tttttaatggaattattgaagaaagaatttgttcaagagcttccgatggtgattatgaggtgtgcaatgatgtgttagattcacttcttaata |
193 |
Q |
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||||| ||||||||||||||||||||||| |||||||| | ||| | | || |||||| ||||||||||||||||||||||||||||||| |
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| T |
28320640 |
tttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttcttaata |
28320551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 28288550 - 28288603
Alignment:
| Q |
19 |
gatttctttccaattcttcgtccttttgatccacaaggtgtgcatgcaaagatg |
72 |
Q |
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|||||||||||||||||||||||||| || |||||| | || ||||||||||| |
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| T |
28288550 |
gatttctttccaattcttcgtcctttagacccacaacgattgtatgcaaagatg |
28288603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 28288683 - 28288716
Alignment:
| Q |
158 |
aggtgtgcaatgatgtgttagattcacttcttaa |
191 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
28288683 |
aggtttgcaatgatgtgttagattcacttcttaa |
28288716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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