View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16087_low_6 (Length: 336)
Name: NF16087_low_6
Description: NF16087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16087_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 17543270 - 17542938
Alignment:
| Q |
1 |
catatgaatacaatcccttcttctgcactccaacattatgatcatcatcatatactcacgccactatctttgtcctaccctcttgttcatgcatattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17543270 |
catatgaatacaatcccttcttctgcactccaacattatgatcatcatcatatactcacgccactatctttgtcctaccctcttgttcatccatattcat |
17543171 |
T |
|
| Q |
101 |
tccatttttgtgtgagaggtaagattttatatttattcttcacttggcatttaaatcaaggccctacttataagctatttcctacgaaggttattattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543170 |
tccatttttgtgtgagaggtaagattttatatttattcttcacttggcatttaaatcaaggccctacttataagctatttcctacgaaggttattattct |
17543071 |
T |
|
| Q |
201 |
gtgcaggactcaaaccagcctcttttctattctctttattcttatttttgttttgatccttatatcagaacttgttcccttgaagtttttgaaccgttcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17543070 |
gtgcaggactcaaaccagcctcttttctattctctttattcttatttttgttttgatccttatataagaacttgttcccttgaagtttttgaaccgttcg |
17542971 |
T |
|
| Q |
301 |
gtgtgcgagcaattagtggggctaacctatgct |
333 |
Q |
| |
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|||||||||||||||||||| ||||||| |||| |
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| T |
17542970 |
gtgtgcgagcaattagtgggactaacctttgct |
17542938 |
T |
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