View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16088_high_2 (Length: 381)
Name: NF16088_high_2
Description: NF16088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16088_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 1863462 - 1863685
Alignment:
| Q |
16 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
115 |
Q |
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| T |
1863462 |
aatatttcgaatcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgtt |
1863561 |
T |
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| Q |
116 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
215 |
Q |
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| T |
1863562 |
gcgtaattgtgttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgcta |
1863661 |
T |
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| Q |
216 |
acaacaaatttatatgcctcatta |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
1863662 |
acaacaaatttatatgcctcatta |
1863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 1864476 - 1864610
Alignment:
| Q |
238 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgtctttataattgctatggtttaatatttggactat |
337 |
Q |
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| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgcctttataattgctatggtttaatatttggactat |
1864575 |
T |
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| Q |
338 |
catttttaagaggttgataaataaacacacacaca |
372 |
Q |
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| T |
1864576 |
catttttaagaggttgataaataaaaacacacaca |
1864610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 51576285 - 51576228
Alignment:
| Q |
234 |
tcattaaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
291 |
Q |
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||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgtttacttaatctcacatt |
51576228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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