View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16088_low_1 (Length: 457)
Name: NF16088_low_1
Description: NF16088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16088_low_1 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0078 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 2851 - 3286
Alignment:
| Q |
10 |
agatgaatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaaga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2851 |
agatgaatgaactagcttttggtttggaattgagtggtcaaagattcatttgggttgtgagagcaccaagtgattcagttagtgctgcttatcttgaaga |
2950 |
T |
|
| Q |
110 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2951 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttattttgccatcatgggcacctcaagttgaaata |
3050 |
T |
|
| Q |
210 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3051 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
3150 |
T |
|
| Q |
310 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3151 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgagattgtggaaaaggagaaaat |
3250 |
T |
|
| Q |
410 |
tgcaaagatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3251 |
tgcaaagatgattaagtgtgttatggaaggggaaga |
3286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 57399 - 57829
Alignment:
| Q |
15 |
aatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaagatgcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| | ||| |
|
|
| T |
57399 |
aatgaactagcttttggtttggaattgagtggtcaaagattcatttgggttgtgagagcaccaagtgattcagttagtgcagcttatcttgaatctacaa |
57498 |
T |
|
| Q |
115 |
atgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaatactaaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |
|
|
| T |
57499 |
atgaagatcctttgaaatttttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaa |
57598 |
T |
|
| Q |
215 |
gcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgtttgcc |
314 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
57599 |
acatagttcagttggtggatttttaagtcattgtggttggaattcagttttggagagtatgcaagagggggtgccaatagtagcttggcctttatttgca |
57698 |
T |
|
| Q |
315 |
gaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaattgcaa |
414 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
57699 |
gaacaagcaatgaatgctgttttgttaagtgatggtcttaaagtggcaataaggttgaaatttgaagatgatgagattgtagaaaaggatgaaattgcaa |
57798 |
T |
|
| Q |
415 |
agatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
| ||||||||||| | |||||||||||||| |
|
|
| T |
57799 |
atgtgattaagtgtttgatggaaggggaaga |
57829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 22110 - 22540
Alignment:
| Q |
15 |
aatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaagatgcaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
22110 |
aatgagctagcttttggtttggaattgagtggtcaaagattcatttgggtattgagagcaccaagtgattcagttagtgctgcttatcttgaagctacaa |
22209 |
T |
|
| Q |
115 |
atgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaatactaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| |||||| ||||||| || |
|
|
| T |
22210 |
atgaagatccactgaaatttttacctaaagggtttttggaaagaacaaaagaaaaaggtttgattttaccatcatgggcaccacaagttcaaatacttaa |
22309 |
T |
|
| Q |
215 |
gcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgtttgcc |
314 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
22310 |
ggaaaagtcagttggtggatttttaagtcattgtggatggaattcagttttggagagtatgcaagagggggtgccaatagtagcttggcctttatttgca |
22409 |
T |
|
| Q |
315 |
gaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaattgcaa |
414 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
22410 |
gaacaagcaatgaatgcagttatgttaagtaatgatcttaaagtggccataaggttgaaatttgaagatgatgagattgtagaaaaggataaaattgcaa |
22509 |
T |
|
| Q |
415 |
agatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
| ||||||||||| | |||||||||||||| |
|
|
| T |
22510 |
atgtgattaagtgtttgatggaaggggaaga |
22540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 16566507 - 16566942
Alignment:
| Q |
10 |
agatgaatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaaga |
109 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
16566507 |
agattaatgaactagcctttggtttggaattgagtagccaaagattcatttgggttgtgagacaaccaagtgattcagttagtgttgtttatcttaaaga |
16566606 |
T |
|
| Q |
110 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16566607 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttattttgccatcatgggcacctcaagttgaaata |
16566706 |
T |
|
| Q |
210 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566707 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
16566806 |
T |
|
| Q |
310 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16566807 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaat |
16566906 |
T |
|
| Q |
410 |
tgcaaagatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16566907 |
tgcaaagatgattaagtctgttatggaaggggaaga |
16566942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Complemental strand, 16599155 - 16598720
Alignment:
| Q |
10 |
agatgaatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaaga |
109 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
16599155 |
agattaatgaactagcctttggtttggaattgagtagccaaagattcatttgggttgtgagacaaccaagtgattcagttagtgttgtttatcttaaaga |
16599056 |
T |
|
| Q |
110 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16599055 |
tgcaaatgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttattttgccatcatgggcacctcaagttgaaata |
16598956 |
T |
|
| Q |
210 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598955 |
ctaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgt |
16598856 |
T |
|
| Q |
310 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598855 |
ttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaat |
16598756 |
T |
|
| Q |
410 |
tgcaaagatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16598755 |
tgcaaagatgattaagtctgttatggaaggggaaga |
16598720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 16491003 - 16491067
Alignment:
| Q |
300 |
tggccattgtttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggcttt |
364 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||| ||||||||| | ||||||||||| |
|
|
| T |
16491003 |
tggccattgtttgctgaacaagggatgaatgctactatgttgtgtgatggtgtgaaagtggcttt |
16491067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 445
Target Start/End: Complemental strand, 15445 - 15015
Alignment:
| Q |
15 |
aatgaactagcttttggtttggaattgagtagtcaaagattcatttgggttgtgagacaaccaagtgattcagttagtgctgtttatcttgaagatgcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| | ||| |
|
|
| T |
15445 |
aatgaactagcttttggtttggaattgagtggtcaaagattcatttgggttgtgagagcaccaagtgattcagttagtgcagcttatcttgaatctacaa |
15346 |
T |
|
| Q |
115 |
atgaagatccactgaaatttttacctaaagggtttttggaaagaaccaaagaaaaaggttttatgttgccatcatgggcacctcaagttgaaatactaaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |
|
|
| T |
15345 |
atgaagatcctttgaaatttttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaa |
15246 |
T |
|
| Q |
215 |
gcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtatacaagagggggtgccaatagtagcttggccattgtttgcc |
314 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
15245 |
acatagttcagttggtggatttttaagtcattgtggttggaattcagttttggagagtatgcaagagggggtgccaatagtagcttggcctttatttgca |
15146 |
T |
|
| Q |
315 |
gaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggctttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaattgcaa |
414 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
15145 |
gaacaagcaatgaatgctgttttgttaagtgatggtcttaaagtggcaataaggttgaaatttgaagatgatgagattgtagaaaaggatgaaattgcaa |
15046 |
T |
|
| Q |
415 |
agatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
| ||||||||||| | |||||||||||||| |
|
|
| T |
15045 |
atgtgattaagtgtttgatggaaggggaaga |
15015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 263 - 445
Target Start/End: Original strand, 1717 - 1899
Alignment:
| Q |
263 |
tttggaaagtatacaagagggggtgccaatagtagcttggccattgtttgccgaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggct |
362 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717 |
tttggagagtatgcaagagggggtgccaatagtagcttggcctttatttgcagaacaagcaatgaatgctgttatgttatgtgatggtcttaaagtggca |
1816 |
T |
|
| Q |
363 |
ttaaggttgaaatttgaagatgatgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaaga |
445 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||| | |||||||||||||| |
|
|
| T |
1817 |
ataaggttgaaatttgaagatgatgagattgtggaaaaggataaaactgcaaatgtgattaagtgtttgatggaaggggaaga |
1899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 1390 - 1432
Alignment:
| Q |
226 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
268 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1390 |
ttggtggttttttaagtcattgtggttggagttcaactttgga |
1432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 8294483 - 8294441
Alignment:
| Q |
226 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
268 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8294483 |
ttggtgggtttttaagtcattgtggttggagttcaactttgga |
8294441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 33257272 - 33257314
Alignment:
| Q |
226 |
ttggtggatttttaagtcattgtggttggaattcgactttgga |
268 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
33257272 |
ttggtggttttttaagtcattgtggttggagttcaactttgga |
33257314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 560529 - 560444
Alignment:
| Q |
189 |
tgggcacctcaagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttggaattcgactttggaaagtat |
274 |
Q |
| |
|
|||||||| ||||||||| | || || || || || |||||| |||||||| |||||||||||||||||| | |||||| ||||| |
|
|
| T |
560529 |
tgggcaccacaagttgaagtccttaaacacaaagcaattggtgcatttttaactcattgtggttggaattcaattttggagagtat |
560444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 5906149 - 5906221
Alignment:
| Q |
183 |
ccatcatgggcacctcaagttgaaatactaaagcaaaattcagttggtggatttttaagtcattgtggttgga |
255 |
Q |
| |
|
||||||||||||||||| ||||||| || | || | |||||||||||||| || |||||||||||||||| |
|
|
| T |
5906149 |
ccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttgga |
5906221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University