View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16088_low_3 (Length: 305)

Name: NF16088_low_3
Description: NF16088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16088_low_3
NF16088_low_3
[»] chr6 (10 HSPs)
chr6 (89-304)||(6476438-6476653)
chr6 (110-304)||(10643758-10643954)
chr6 (143-300)||(29834064-29834221)
chr6 (143-300)||(29865498-29865655)
chr6 (109-304)||(30877996-30878191)
chr6 (117-300)||(3110038-3110221)
chr6 (193-292)||(7858203-7858302)
chr6 (90-129)||(29834041-29834080)
chr6 (90-129)||(29865475-29865514)
chr6 (184-292)||(709070-709178)
[»] chr8 (23 HSPs)
chr8 (89-300)||(41386595-41386806)
chr8 (89-300)||(7148188-7148399)
chr8 (89-300)||(2112939-2113150)
chr8 (89-300)||(29260001-29260212)
chr8 (91-305)||(42275115-42275330)
chr8 (90-300)||(43605090-43605300)
chr8 (92-300)||(4655195-4655403)
chr8 (90-300)||(41965526-41965734)
chr8 (93-300)||(40265010-40265217)
chr8 (126-300)||(10802533-10802707)
chr8 (109-300)||(28619992-28620183)
chr8 (109-304)||(4302551-4302748)
chr8 (110-304)||(37567118-37567312)
chr8 (110-304)||(30382420-30382614)
chr8 (143-300)||(9457691-9457848)
chr8 (129-304)||(8502776-8502951)
chr8 (129-304)||(35142186-35142361)
chr8 (109-304)||(9209180-9209367)
chr8 (90-170)||(41965324-41965404)
chr8 (255-304)||(40013363-40013412)
chr8 (109-189)||(40013242-40013324)
chr8 (253-300)||(1605902-1605949)
chr8 (89-129)||(9457832-9457872)
[»] chr7 (11 HSPs)
chr7 (89-300)||(43057406-43057617)
chr7 (89-300)||(30110951-30111162)
chr7 (93-300)||(152006-152213)
chr7 (89-294)||(35089831-35090036)
chr7 (89-300)||(27418367-27418578)
chr7 (109-304)||(40097238-40097434)
chr7 (89-188)||(47914054-47914153)
chr7 (185-300)||(47914878-47914993)
chr7 (110-304)||(39301002-39301185)
chr7 (91-119)||(33474820-33474848)
chr7 (184-292)||(46037170-46037278)
[»] chr2 (10 HSPs)
chr2 (89-300)||(29941093-29941304)
chr2 (95-300)||(6289232-6289437)
chr2 (89-300)||(45547079-45547290)
chr2 (110-304)||(24193232-24193426)
chr2 (110-304)||(11534979-11535173)
chr2 (109-305)||(34028677-34028873)
chr2 (109-304)||(20157502-20157697)
chr2 (115-304)||(11998169-11998357)
chr2 (129-304)||(24193693-24193875)
chr2 (168-304)||(45485505-45485631)
[»] chr3 (19 HSPs)
chr3 (90-300)||(24150558-24150768)
chr3 (92-300)||(38629528-38629736)
chr3 (91-300)||(35731080-35731289)
chr3 (89-300)||(36054732-36054943)
chr3 (90-300)||(50900173-50900383)
chr3 (89-277)||(26005580-26005768)
chr3 (90-294)||(26293293-26293497)
chr3 (89-300)||(30588987-30589199)
chr3 (109-300)||(46251948-46252139)
chr3 (109-300)||(13662696-13662887)
chr3 (110-304)||(27593296-27593490)
chr3 (110-304)||(39338046-39338237)
chr3 (91-300)||(19551885-19552084)
chr3 (151-300)||(26005770-26005919)
chr3 (109-304)||(36786115-36786309)
chr3 (116-304)||(52023955-52024139)
chr3 (148-304)||(38682570-38682728)
chr3 (122-300)||(26555962-26556123)
chr3 (219-300)||(6783956-6784037)
[»] chr4 (20 HSPs)
chr4 (89-300)||(8583730-8583941)
chr4 (89-300)||(42218171-42218382)
chr4 (91-300)||(44930023-44930232)
chr4 (90-300)||(3435689-3435893)
chr4 (128-300)||(8880592-8880764)
chr4 (110-292)||(52109562-52109744)
chr4 (115-304)||(47685288-47685477)
chr4 (109-304)||(26336212-26336407)
chr4 (113-304)||(45332810-45333001)
chr4 (113-304)||(45340500-45340691)
chr4 (109-290)||(25935945-25936127)
chr4 (113-304)||(42720863-42721055)
chr4 (110-304)||(54509858-54510050)
chr4 (129-304)||(33449944-33450119)
chr4 (90-202)||(7820292-7820405)
chr4 (110-304)||(40143920-40144098)
chr4 (1-65)||(43025905-43025969)
chr4 (222-268)||(7820242-7820288)
chr4 (221-291)||(20539089-20539159)
chr4 (91-119)||(56397742-56397770)
[»] chr1 (13 HSPs)
chr1 (91-300)||(26882553-26882762)
chr1 (90-300)||(45318608-45318818)
chr1 (89-300)||(52705541-52705752)
chr1 (110-304)||(36402391-36402585)
chr1 (109-304)||(1928149-1928344)
chr1 (113-304)||(29208899-29209090)
chr1 (110-304)||(33243060-33243250)
chr1 (110-304)||(33263233-33263423)
chr1 (110-304)||(10896944-10897138)
chr1 (143-241)||(45534991-45535089)
chr1 (147-231)||(9831783-9831867)
chr1 (239-304)||(9831434-9831499)
chr1 (261-300)||(45534954-45534993)
[»] scaffold0153 (1 HSPs)
scaffold0153 (89-300)||(34539-34750)
[»] chr5 (5 HSPs)
chr5 (90-294)||(40410744-40410948)
chr5 (110-304)||(6828537-6828732)
chr5 (129-293)||(17518584-17518748)
chr5 (129-304)||(10571255-10571430)
chr5 (184-301)||(2276025-2276142)
[»] scaffold0016 (1 HSPs)
scaffold0016 (89-300)||(81507-81718)
[»] scaffold0237 (2 HSPs)
scaffold0237 (143-300)||(21192-21349)
scaffold0237 (91-129)||(21170-21208)
[»] scaffold0202 (1 HSPs)
scaffold0202 (109-304)||(16303-16482)
[»] scaffold0472 (1 HSPs)
scaffold0472 (184-292)||(1705-1813)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 89 - 304
Target Start/End: Original strand, 6476438 - 6476653
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  6476438 tgaatttgaaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaa 6476537  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  6476538 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaat 6476637  T
Q  289 accactgaattttatt 304  Q
    ||||||| ||||||||    
T  6476638 accactggattttatt 6476653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 10643758 - 10643954
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    |||||| |||||||||||||||||||| |||||||| |||  |||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  10643758 aaatcttaaggctatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 10643857  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtg--caaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||| ||  | ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  10643858 ctcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagttgtgatcaaaatctcaattgaataccactggattttatt 10643954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 29834064 - 29834221
Alignment:
Q  143 tctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagtttt 242  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29834163  T
Q  243 gaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  29834164 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggattt 29834221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 29865498 - 29865655
Alignment:
Q  143 tctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagtttt 242  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29865597  T
Q  243 gaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  29865598 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggattt 29865655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 30878191 - 30877996
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||   |||||||||||||| | ||||||||||||||||    
T  30878191 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 30878092  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||| |||||||||||||||||  || | |||||||||  | ||||||||||||||| ||| |||||||| ||||||||||||||  ||||||||    
T  30878091 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaattgaataccactagattttatt 30877996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 117 - 300
Target Start/End: Original strand, 3110038 - 3110221
Alignment:
Q  117 aaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaa 216  Q
    |||||||||||||||||| |||||||||| ||  ||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||    
T  3110038 aaggctatgtgtgggagatagaaaagtcttaatactaggtgcgagattgtcagtatgtacattttacactaaacaatctcacaaaatccattactcacaa 3110137  T
Q  217 caatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    ||||||||||||||| ||| |||||||||||   | | |||||||| |||||  ||||||||||||||||||| ||||| ||||    
T  3110138 caatccattaaaatccgtagagttttgaataactgcacacaattttcaagttaggcaaaatctcaattgaatatcactggattt 3110221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 7858203 - 7858302
Alignment:
Q  193 tctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacca 292  Q
    |||||||||||| ||||||||||||||| |||||||||| ||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  7858203 tctcacaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaatacca 7858302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 29834041 - 29834080
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtg 129  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  29834041 gaatttggaagagtattacaaaatctcaaggttaggtgtg 29834080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 29865475 - 29865514
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtg 129  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  29865475 gaatttggaagagtattacaaaatctcaaggttaggtgtg 29865514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 709178 - 709070
Alignment:
Q  184 actaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaat 283  Q
    |||||| | ||||||||||||||||||   ||| ||||||| ||||||| || | |||||||||  | |||||||||  |||||  ||  |||| |||||    
T  709178 actaaaaagtctcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaat 709079  T
Q  284 tgaatacca 292  Q
    |||||||||    
T  709078 tgaatacca 709070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 41386595 - 41386806
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41386595 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 41386694  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  41386695 acaatctcataaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaat 41386794  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  41386795 accactggattt 41386806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 7148399 - 7148188
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7148399 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 7148300  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||   |||||||||||| |||||| |||||||||||||||||||    
T  7148299 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatgccagtagacaatttctaagttatgcaaaatctcaattgaat 7148200  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  7148199 accactggattt 7148188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 2113150 - 2112939
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  2113150 tgaatttggaagagtattacaaaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaa 2113051  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||| |||||||||||||||    
T  2113050 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattgaat 2112951  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  2112950 accactggattt 2112939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 29260001 - 29260212
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  29260001 tgaatttggaatagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaa 29260100  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  29260101 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 29260200  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  29260201 accactggattt 29260212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 91 - 305
Target Start/End: Complemental strand, 42275330 - 42275115
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattg-ttagtaggaacattttacactaaa 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  42275330 aatttggaagagtattacaaaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaa 42275231  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  42275230 caatctcacaaaatccattactcacaacaatccataaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 42275131  T
Q  290 ccactgaattttattt 305  Q
    || ||| |||| ||||    
T  42275130 ccgctggatttcattt 42275115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 43605090 - 43605300
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  43605090 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttacattaaa 43605189  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||    
T  43605190 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcgaaatctcaattgaata 43605289  T
Q  290 ccactgaattt 300  Q
    |||||| ||||    
T  43605290 ccactggattt 43605300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 92 - 300
Target Start/End: Complemental strand, 4655403 - 4655195
Alignment:
Q  92 atttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaaca 191  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  4655403 atttggaagagtatcacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaaaca 4655304  T
Q  192 atctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacc 291  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||   |||||||||||||||||| ||||||||||||||||||||||    
T  4655303 atctcacaaaatccattactcataacaatccattaaaatccgtagagttttgaataccggtagacaatttttaagttatgcaaaatctcaattgaatacc 4655204  T
Q  292 actgaattt 300  Q
    |||||||||    
T  4655203 actgaattt 4655195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 41965526 - 41965734
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  41965526 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaa 41965625  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
     |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||  |||||||| ||||||||||||||||||||    
T  41965626 taatctcacaaaatccattactcacaacaatccattaaaatatgtagagttttgaataccagtagacaa--tttaagttatgcaaaatctcaattgaata 41965723  T
Q  290 ccactgaattt 300  Q
    |||||| ||||    
T  41965724 ccactggattt 41965734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 40265010 - 40265217
Alignment:
Q  93 tttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaa 192  Q
    ||||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40265010 tttggtagagtattacaaaatctaaaggctacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 40265109  T
Q  193 tctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacca 292  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||||  | ||||||||||||||||| |||||||||||||||||||||||    
T  40265110 tctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaatacca 40265209  T
Q  293 ctgaattt 300  Q
    ||| ||||    
T  40265210 ctggattt 40265217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 126 - 300
Target Start/End: Original strand, 10802533 - 10802707
Alignment:
Q  126 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccatt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10802533 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccatt 10802632  T
Q  226 aaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  10802633 aaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaataccactggattt 10802707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 109 - 300
Target Start/End: Complemental strand, 28620183 - 28619992
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||| |||||||||||||||| | ||||    
T  28620183 aaaatctcaaggttatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtacattaaacaatctcacaaagttcatt 28620084  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    ||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28620083 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactgaattt 28619992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 109 - 304
Target Start/End: Original strand, 4302551 - 4302748
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaa--gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatcca 206  Q
    |||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||||| | |||| | |||||||    
T  4302551 aaaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaaagtctcgctaaatcca 4302650  T
Q  207 ttactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||||||||||  || | ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4302651 ttactcacaacaatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattgaataccattgaattttatt 4302748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 37567118 - 37567312
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||| |  ||||||||||||||||    
T  37567118 aaatcttaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaaaagcctcacaaaatccatta 37567217  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||| |||||||||| ||| | |||||||||  | ||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  37567218 ctcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatactactggattttatt 37567312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 30382420 - 30382614
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||| | ||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||| | |||||||||||  ||||    
T  30382420 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaattgatta 30382519  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30382520 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttatt 30382614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 143 - 300
Target Start/End: Complemental strand, 9457848 - 9457691
Alignment:
Q  143 tctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagtttt 242  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 9457749  T
Q  243 gaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9457748 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggattt 9457691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 8502951 - 8502776
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaa 228  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  8502951 gggagacggaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaatccattaaa 8502852  T
Q  229 atctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||| ||| | |||| ||||  | |||||||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  8502851 atccgtagaattttaaataccaatagacaatttttaagttgtgcaaaatcttaattgaataccaccggattttatt 8502776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 35142361 - 35142186
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaa 228  Q
    ||||||| |||||||||  ||||||| ||||||| |||||||||| | ||||||||||||| | ||||| ||||||||||||||||||||||| | ||||    
T  35142361 gggagaccgaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaaaaagtctcataaaatccattactcacaacaatctaataaa 35142262  T
Q  229 atctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||| ||||  |||||||||  | ||||||||||||||||||| |||||||| |||||||||| || | ||||||||    
T  35142261 atccgtaatattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaatacgaccggattttatt 35142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 9209367 - 9209180
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||||| ||||||||| |||| |||||||||||||        ||||||||||||||| ||||||||||||||| | |||||||||||  |||    
T  9209367 aaaatctcaaggc-atgtgtgggggacaaaaaagtctcaaggg-------gagattgttagtaggtacattttacactaaaaagtctcacaaaataaatt 9209276  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    || |||||||| | |||||||||  || |||||||||||  | ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  9209275 acccacaacaaactattaaaatccttagagttttgaataccaatagacaatttttaagttgtccaaaatttcaattgaataccactggattttatt 9209180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 41965324 - 41965404
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41965324 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 40013363 - 40013412
Alignment:
Q  255 acaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40013363 acaatttttaagttgtgcaaaatctaaattgaataccactgaattttatt 40013412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 40013242 - 40013324
Alignment:
Q  109 aaaatctcaagg-ctatgtgtggg-agacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    |||||||||| | ||||||||||| |||||||||||||||||||| | ||||||||||||||||||| | |||||| ||||||    
T  40013242 aaaatctcaaagtctatgtgtggggagacagaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaaa 40013324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 1605902 - 1605949
Alignment:
Q  253 agacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  1605902 agacaatttttaagttatgcaaaatctcaattgaatactactggattt 1605949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 9457872 - 9457832
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtg 129  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  9457872 tgaatttggaagagtattacaaaatctcaaggttaggtgtg 9457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 43057406 - 43057617
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43057406 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 43057505  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  43057506 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 43057605  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  43057606 accactggattt 43057617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 30111162 - 30110951
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  30111162 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 30111063  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  30111062 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataatagcagacaatttttaagttatgcaaaatctcaattgaat 30110963  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  30110962 accactggattt 30110951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 93 - 300
Target Start/End: Complemental strand, 152213 - 152006
Alignment:
Q  93 tttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaa 192  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  152213 tttggtagagtattacaaaatctaaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaa 152114  T
Q  193 tctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacca 292  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  | ||||||||||||||||| |||||||||||||||||||||||    
T  152113 tctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaatacca 152014  T
Q  293 ctgaattt 300  Q
    ||| ||||    
T  152013 ctggattt 152006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 89 - 294
Target Start/End: Original strand, 35089831 - 35090036
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || ||    
T  35089831 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacattttataccaa 35089930  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  35089931 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 35090030  T
Q  289 accact 294  Q
    ||||||    
T  35090031 accact 35090036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 27418367 - 27418578
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  27418367 tgaatttggaagagtattacaaaatctcaaggctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 27418466  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  27418467 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgattactagcagacaatttttaagttatgcaaaatctcaattgaat 27418566  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  27418567 accactggattt 27418578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 40097434 - 40097238
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccat 207  Q
    ||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||||||||||||   ||||||||| |||| | |||||||||||||||    
T  40097434 aaaatctcaagactatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacattaaaaagtctcacaaaatccat 40097335  T
Q  208 tactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    || ||| |||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40097334 tagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactgaattttatt 40097238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 47914054 - 47914153
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47914054 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 47914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 47914878 - 47914993
Alignment:
Q  185 ctaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaatt 284  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  47914878 ctaaacaatctcacaaaatccattactcacaacaatccataaaaatctgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaatt 47914977  T
Q  285 gaataccactgaattt 300  Q
    ||||||||||| ||||    
T  47914978 gaataccactggattt 47914993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 39301002 - 39301185
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||| ||||            |||||||    
T  39301002 aaatctcaaggctatatgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacattaaa------------atccatt 39301089  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||| |||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  39301090 actcacaacaatctattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggaatttatt 39301185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 33474848 - 33474820
Alignment:
Q  91 aatttggaagagtattacaaaatctcaag 119  Q
    |||||||||||||||||||||||||||||    
T  33474848 aatttggaagagtattacaaaatctcaag 33474820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 46037170 - 46037278
Alignment:
Q  184 actaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaat 283  Q
    |||||| | |||||||||||||||| |   ||| ||||||| ||||||| || | |||||||||  | |||||||||  |||||  ||  ||||||||||    
T  46037170 actaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatctcaat 46037269  T
Q  284 tgaatacca 292  Q
    |||||||||    
T  46037270 tgaatacca 46037278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 29941304 - 29941093
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29941304 tgaatttggaagagtattacaaaatctcaaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 29941205  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  29941204 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 29941105  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  29941104 accactggattt 29941093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 95 - 300
Target Start/End: Original strand, 6289232 - 6289437
Alignment:
Q  95 tggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatc 194  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6289232 tggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatc 6289331  T
Q  195 tcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccact 294  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  6289332 tcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattgaataccact 6289431  T
Q  295 gaattt 300  Q
    | ||||    
T  6289432 ggattt 6289437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 45547290 - 45547079
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  45547290 tgaatttggaagtgtattacaaaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 45547191  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||| |||||||||||||||    
T  45547190 acaatctcacaaaatccattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaat 45547091  T
Q  289 accactgaattt 300  Q
    ||||||||||||    
T  45547090 accactgaattt 45547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 24193232 - 24193426
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    |||| ||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  24193232 aaatttcaagactatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 24193331  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24193332 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 24193426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 11535173 - 11534979
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  11535173 aaatctcaaagctatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 11535074  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  11535073 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaattccactggattttatt 11534979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 109 - 305
Target Start/End: Original strand, 34028677 - 34028873
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||   |||||||||||||| | ||||||||||||||||    
T  34028677 aaaatctcaagactatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 34028776  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttattt 305  Q
    ||||  |||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  34028777 actcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactggattttattt 34028873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 109 - 304
Target Start/End: Original strand, 20157502 - 20157697
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||   |||||||||||||| | ||||||||||||||||    
T  20157502 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 20157601  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||| ||||||| |||||||||  || | |||||||||  | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  20157602 actcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaattgaataccactgaattttatt 20157697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 304
Target Start/End: Original strand, 11998169 - 11998357
Alignment:
Q  115 tcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcac 214  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||| ||||  ||||||||||||||| | ||||||||||||||||||||||    
T  11998169 tcaaggctatgtgtgggagacaaaaaaatctcaaggct-ggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcac 11998267  T
Q  215 aacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||| |||||||||||  || | |||||||||  | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  11998268 aacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 11998357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 24193875 - 24193693
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccatt--- 225  Q
    |||||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||       
T  24193875 gggagacagaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacagcaatccattaaa 24193776  T
Q  226 ----aaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
        |||||  ||| | |||||||||  | || ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24193775 aattaaaattcgtagaattttgaataccaataaacagtttttaagttgtgcaaaatctcaattgaataccaccgaattttatt 24193693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 168 - 304
Target Start/End: Complemental strand, 45485631 - 45485505
Alignment:
Q  168 agtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagt 267  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||          |    
T  45485631 agtaggtacattttacgctaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagaattttgaatattagtagac----------t 45485542  T
Q  268 tgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    | |||||||||||||||||||||||||||||||||||    
T  45485541 tatgcaaaatctcaattgaataccactgaattttatt 45485505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 24150558 - 24150768
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24150558 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 24150657  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||| ||||||||||||||| ||||||||||||||||||||    
T  24150658 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattgaata 24150757  T
Q  290 ccactgaattt 300  Q
    |||||| ||||    
T  24150758 ccactggattt 24150768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 92 - 300
Target Start/End: Original strand, 38629528 - 38629736
Alignment:
Q  92 atttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaaca 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38629528 atttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 38629627  T
Q  192 atctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacc 291  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  38629628 atctcacaaaatccattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatacc 38629727  T
Q  292 actgaattt 300  Q
     ||||||||    
T  38629728 gctgaattt 38629736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 35731289 - 35731080
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaac 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||  |||||||||||||||    
T  35731289 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaaac 35731190  T
Q  191 aatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatac 290  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  35731189 aatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 35731090  T
Q  291 cactgaattt 300  Q
    ||||| ||||    
T  35731089 cactggattt 35731080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 36054732 - 36054943
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  36054732 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaa 36054831  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||| |||||||||||||||| |||||||||||||||||||    
T  36054832 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaaaactagcagacaatttttaagttatgcaaaatctcaattgaat 36054931  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  36054932 accactggattt 36054943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 50900173 - 50900383
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  50900173 gaatttggaagagtattacaaaatctcaaggaaatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacattaaa 50900272  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||| |||||||||||||| |||||    
T  50900273 caatctcacaaaatccattactcacaacaatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatcgaata 50900372  T
Q  290 ccactgaattt 300  Q
    |||||| ||||    
T  50900373 ccactggattt 50900383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 26005580 - 26005768
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26005580 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 26005679  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaat 277  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  | ||||||||||||||||| ||||||||    
T  26005680 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaatagacaatttttaagttatgcaaaat 26005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 294
Target Start/End: Original strand, 26293293 - 26293497
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||    
T  26293293 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaa 26293392  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  26293393 caatcacacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatactagtaaacaatttttaagttatgcaaaatctcaattaaata 26293492  T
Q  290 ccact 294  Q
     ||||    
T  26293493 tcact 26293497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 30589199 - 30588987
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacacta 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || | |||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  30589199 tgaatttggaagagtattacaaaatctgaaggctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacacta 30589100  T
Q  188 aacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||| ||||||||||||||    
T  30589099 aacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaa 30589000  T
Q  288 taccactgaattt 300  Q
    |||||||||||||    
T  30588999 taccactgaattt 30588987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 109 - 300
Target Start/End: Original strand, 46251948 - 46252139
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46251948 aaaatctcgagcttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 46252047  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    ||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  46252048 actcacaacaatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattgaataccactggattt 46252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 300
Target Start/End: Complemental strand, 13662887 - 13662696
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13662887 aaaatctcaaggttatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 13662788  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    ||||||||||||||||||||| | |||  ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  13662787 actcacaacaatccattaaaacccgtagtgttttgaatacgagtagacaatttttaagttgtgcgaaatctcaattgaataccactggattt 13662696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 27593490 - 27593296
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  27593490 aaatctcaaagctatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 27593391  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  27593390 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagatgtgcaaaacctcaattgaataccactgaattttatt 27593296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 39338046 - 39338237
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    |||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||    
T  39338046 aaatctgaaggctatttgtgggagaca-aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctca--aaatccatta 39338142  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39338143 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttatt 39338237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 91 - 300
Target Start/End: Original strand, 19551885 - 19552084
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaac 190  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  19551885 aatttggaagagtattacaaaatctcaaggctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacactaaac 19551984  T
Q  191 aatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatac 290  Q
    ||| |||||||||          |||||||| ||||||||||||| |||||||||||  | ||||||||||||||||| |||||||||| |||| |||||    
T  19551985 aatttcacaaaat----------caacaatcaattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaatcttaattaaatac 19552074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 151 - 300
Target Start/End: Original strand, 26005770 - 26005919
Alignment:
Q  151 ctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatatta 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||  |    
T  26005770 ctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaatacca 26005869  T
Q  251 gtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  26005870 gtagacaatttttaagttatgcaaaatctcaattgaataccactggattt 26005919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 36786309 - 36786115
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||||||    
T  36786309 aaaatctcaaggctatgtgtgagagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaaaaagtctcataaaatccatt 36786211  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||| ||||||||||  || | |||||||||  | ||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  36786210 actcacaacaattcattaaaatccttacaattttgaataccaatagacaagtttaaagttttgcaaaatctcaattgaataccactggattttatt 36786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 304
Target Start/End: Original strand, 52023955 - 52024139
Alignment:
Q  116 caaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcaca 215  Q
    |||| |||||||||||||||| ||||||||    | ||||||||||||||||| |||| |||||||| |||||| | ||||  |||||||||||||||||    
T  52023955 caagtctatgtgtgggagacaaaaaagtct----gttaggtgtgagattgttactaggtacattttatactaaaaagtctcttaaaatccattactcaca 52024050  T
Q  216 acaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||| ||| | |||||| || || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  52024051 acaatccattaaaatccgtagaattttgattactaatagacaatttttaaattgtgcaaaatctcaattgaataccactggattttatt 52024139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 38682728 - 38682570
Alignment:
Q  148 aggctaggtgtgagattgttagtaggaac---attttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttga 244  Q
    |||||||||||||||||||||||||| ||   |||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||| | ||||||    
T  38682728 aggctaggtgtgagattgttagtaggtactacattttatactaaaaaatctctcaaaatccattactcacaacaatccattaaaatccgtagaattttga 38682629  T
Q  245 atattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||  | || ||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  38682628 ataccaata-acaatttttaagttgtgcaaaatctcaattgaatatcactgaagtttatt 38682570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 26556123 - 26555962
Alignment:
Q  122 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatc 221  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                    
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatcc---------------- 26556040  T
Q  222 cattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
     ||||||||| ||| |||||||||||   |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  26556039 -attaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaataccactggattt 26555962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 6783956 - 6784037
Alignment:
Q  219 atccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    ||||||| |||||| || | |||||||||| |  ||||||||||||||||||| |||||||  || ||||||||| ||||||    
T  6783956 atccattgaaatctatacatttttgaatatcaagagacaatttttaagttgtggaaaatcttgatggaataccaccgaattt 6784037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 8583730 - 8583941
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8583730 tgaatttggaagagtattacaaaatctcaaggctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 8583829  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||| ||||||||    
T  8583830 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattgaat 8583929  T
Q  289 accactgaattt 300  Q
    ||||||||||||    
T  8583930 accactgaattt 8583941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 42218171 - 42218382
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42218171 tgaatttggaagaatattacaaaatctcaaggctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 42218270  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  42218271 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaatatcagtagacaatttttaagttatgcaaaatctcaattgaat 42218370  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  42218371 accactggattt 42218382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 44930232 - 44930023
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaac 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44930232 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 44930133  T
Q  191 aatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatac 290  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||   |||||||||||||||||| |||||||||||||||||||||    
T  44930132 aatctcacaaaatcctttactcacaacaatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaatac 44930033  T
Q  291 cactgaattt 300  Q
    ||||||||||    
T  44930032 cactgaattt 44930023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 3435689 - 3435893
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    ||||||||||||||||||||||||||||||||||||      ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3435689 gaatttggaagagtattacaaaatctcaaggctatg------agatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 3435782  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||  || | |||||||||||||| ||||||||||||||||||||    
T  3435783 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagcacacaatttttaagttatgcaaaatctcaattgaata 3435882  T
Q  290 ccactgaattt 300  Q
    |||||||||||    
T  3435883 ccactgaattt 3435893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 8880764 - 8880592
Alignment:
Q  128 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaa 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8880764 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaa 8880665  T
Q  228 aatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8880664 aatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaataccactggattt 8880592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 52109744 - 52109562
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  52109744 aaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttacattaaacaatctcacaaaatccatta 52109645  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacca 292  Q
    |||||||||||||||||||||| ||| ||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||    
T  52109644 ctcacaacaatccattaaaatccgtagagttttgaatatcggtatacaatttttaagttatgcaaaatctcaattgaatacca 52109562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 115 - 304
Target Start/End: Complemental strand, 47685477 - 47685288
Alignment:
Q  115 tcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcac 214  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||| | |||| ||||||| |||||||||    
T  47685477 tcaaggctatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaaaaagtctcgcaaaatctattactcac 47685378  T
Q  215 aacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||  || | |||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47685377 aacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgagcaaaatctcaattgaataccactgaattttatt 47685288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 26336407 - 26336212
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||| | ||||||||||||||||    
T  26336407 aaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccatt 26336308  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||| ||||||||||||||  || | |||||||||  | || ||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  26336307 actcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 26336212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 45333001 - 45332810
Alignment:
Q  113 tctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactc 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||| | | ||| ||||||||||||||    
T  45333001 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45332902  T
Q  213 acaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||||  || | |||||||||  | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  45332901 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 45332810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 45340691 - 45340500
Alignment:
Q  113 tctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactc 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||| | | ||| ||||||||||||||    
T  45340691 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45340592  T
Q  213 acaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||||  || | |||||||||  | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  45340591 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 45340500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 290
Target Start/End: Complemental strand, 25936127 - 25935945
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagaca--gaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatcca 206  Q
    |||||||||||  |||||||||||||||  |||||||||||||||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  25936127 aaaatctcaagattatgtgtgggagacacagaaaagtctcaaggctag-tgtgagattgttaataggttcattttacactaaacaatctcacaaaatcca 25936029  T
Q  207 ttactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatac 290  Q
    ||||||||||||||||||||||||  |   ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  25936028 ttactcacaacaatccattaaaattcgatgagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaatac 25935945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 42721055 - 42720863
Alignment:
Q  113 tctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattact 211  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||  ||||||||||||||| | |||||||||||||||||||    
T  42721055 tctcaaggctatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattact 42720956  T
Q  212 cacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||| |||||||||||  || | |||||||||  | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  42720955 cacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 42720863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 54510050 - 54509858
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||| ||||||||||||||||| |||| | ||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  54510050 aaatctcaaagctatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 54509951  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
       || |||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54509950 ---cataacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttatt 54509858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 129 - 304
Target Start/End: Original strand, 33449944 - 33450119
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaa 228  Q
    ||||||||||||||| |  |||||| ||||||||||||||||||  |||||||||||||||   |||||||||||||||||||||||| |||||||||||    
T  33449944 gggagacagaaaagtgttgaggctatgtgtgagattgttagtagatacattttacactaaaatgtctcacaaaatccattactcacaataatccattaaa 33450043  T
Q  229 atctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||| ||| | |||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33450044 atccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccaccgaattttatt 33450119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 7820405 - 7820292
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaagg-ctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  7820405 gaatttggaagagtaatacaaaatcccaagggctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttacactaa 7820306  T
Q  189 acaatctcacaaaa 202  Q
    ||||||||| ||||    
T  7820305 acaatctcataaaa 7820292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 40144098 - 40143920
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||||| | |                    
T  40144098 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagt---------------- 40144015  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||||||   || | |||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40144014 ctcacaacaatccattaaaattcttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaatacctctgaattttatt 40143920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43025969 - 43025905
Alignment:
Q  1 ttatcaacagtttaatcatgtaagcacttacatcactcaataaaatatttatgcttgcatatgcc 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025969 ttatcaacagtttaatcatgtaagcacttacatcactcaataaaatatttatgcttgcatatgcc 43025905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 7820288 - 7820242
Alignment:
Q  222 cattaaaatctgtaaagttttgaatattagtagacaatttttaagtt 268  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  7820288 cattaaaatccgtagagttttgaatactagtagacaatttttaagtt 7820242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 20539159 - 20539089
Alignment:
Q  221 ccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatacc 291  Q
    ||||||||||||| | | |||||||||| | ||||||||||||||| ||||   |||| ||||||||||||    
T  20539159 ccattaaaatctgcatacttttgaatatcaatagacaatttttaagctgtgaggaatcccaattgaatacc 20539089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 56397770 - 56397742
Alignment:
Q  91 aatttggaagagtattacaaaatctcaag 119  Q
    |||||||||||||||||||||||||||||    
T  56397770 aatttggaagagtattacaaaatctcaag 56397742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 91 - 300
Target Start/End: Original strand, 26882553 - 26882762
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaac 190  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  26882553 aatttggaagagtattacaaaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaaac 26882652  T
Q  191 aatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaatac 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  26882653 aatctcacaaaatccattactcacaacaatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaatac 26882752  T
Q  291 cactgaattt 300  Q
    ||||| ||||    
T  26882753 cactggattt 26882762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 90 - 300
Target Start/End: Complemental strand, 45318818 - 45318608
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  45318818 gaatttggaagagtattacaaaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaa 45318719  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  45318718 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 45318619  T
Q  290 ccactgaattt 300  Q
    |||||| ||||    
T  45318618 ccactggattt 45318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 52705752 - 52705541
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| | ||||||||||| ||    
T  52705752 tgaatttggaagagtattacaatatctcaaggctatgtgtgggagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacattttacaccaa 52705653  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  52705652 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaat 52705553  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  52705552 accactggattt 52705541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 36402585 - 36402391
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||| | ||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  36402585 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 36402486  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36402485 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttatt 36402391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 109 - 304
Target Start/End: Original strand, 1928149 - 1928344
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||   |||||||||||||| | ||||||||||||||||    
T  1928149 aaaatctcaagactatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 1928248  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||| |||||||||||||||||  || | |||||||||  | |||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1928249 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactggattttatt 1928344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 29209090 - 29208899
Alignment:
Q  113 tctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactc 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  | || |||||||||| | ||||||||||||||||||||    
T  29209090 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaaaaagtctcacaaaatccattactc 29208991  T
Q  213 acaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||||||||||||  || |  ||||||||  | |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  29208990 acaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaatacctctggattttatt 29208899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 33243060 - 33243250
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||| ||| |||||| |||| | | |||||||||||||||    
T  33243060 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33243155  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  33243156 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaataccactggattttatt 33243250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 33263233 - 33263423
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||||||||||||||||||||| |||||||||     |||||||||||||||||||||| ||| |||||| |||| | | |||||||||||||||    
T  33263233 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33263328  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||||||||||||||||||||  || | |||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  33263329 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattgaataccactggattttatt 33263423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 10897138 - 10896944
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatta 209  Q
    ||||||||| |||||||||| |||||| |||||| |||||| |||||||||||||||||||||| |||||||||| ||||   | |||||||||||||||    
T  10897138 aaatctcaaagctatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttacattaaaatgtttcacaaaatccatta 10897039  T
Q  210 ctcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||| |||||||||||||||||     | |||||||||  | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  10897038 ctcataacaatccattaaaatcctaccaattttgaataccaatagacaatttttaagttgggcaaaatctcaattgaataccactggattttatt 10896944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 45535089 - 45534991
Alignment:
Q  143 tctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttt 241  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||    
T  45535089 tctcaaggctacgtgtgagattgttagtaggtacattttacactcaacaatctcaaaaaatccattactcacaacaatccattaaaatcagtagagttt 45534991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 9831867 - 9831783
Alignment:
Q  147 aaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatc 231  Q
    |||| |||||||||||||||||||| | | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  9831867 aaggttaggtgtgagattgttagtaagtatattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaatc 9831783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 9831499 - 9831434
Alignment:
Q  239 ttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||  | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  9831499 ttttgaataccaatagacaatttgtaagttgtgcaaaatctcaattgaataccactggattttatt 9831434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 45534993 - 45534954
Alignment:
Q  261 tttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  45534993 tttaagttatgcaaaatctcaattgaataccgctgaattt 45534954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 34539 - 34750
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  34539 tgaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 34638  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||| |||||||||||||||||||    
T  34639 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatatcagcagacaatttttaagttatgcaaaatctcaattgaat 34738  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  34739 accactgtattt 34750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 90 - 294
Target Start/End: Complemental strand, 40410948 - 40410744
Alignment:
Q  90 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaa 189  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  40410948 gaatttggaaaagtattacaaaatttcaaggctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaa 40410849  T
Q  190 caatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaata 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  40410848 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatacgagtagacaatttttaagttatgcaaaatctcaattgaata 40410749  T
Q  290 ccact 294  Q
    |||||    
T  40410748 ccact 40410744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 110 - 304
Target Start/End: Original strand, 6828537 - 6828732
Alignment:
Q  110 aaatctcaaggctatgtgtgggagacagaaaa-gtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccatt 208  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  6828537 aaatctcaaagctatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 6828636  T
Q  209 actcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    ||||| |||||||||||||||||  || | |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6828637 actcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaataccactggattttatt 6828732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 17518748 - 17518584
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaa 228  Q
    |||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||| |||||||||    
T  17518748 gggagacagaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcgcaacattccattaaa 17518649  T
Q  229 atctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccac 293  Q
    ||| ||| | ||||||||   | || ||||||||||||||||||||||||| |||||||||||||    
T  17518648 atccgtagaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaattgaataccac 17518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 10571430 - 10571255
Alignment:
Q  129 gggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaa 228  Q
    ||||||||||||||||| |||| |||||||||||||||||||| | |||||||| |||||| | | |||||||||||||| || ||||||||| ||||||    
T  10571430 gggagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaaaaagtttcacaaaatccattcctgacaacaatctattaaa 10571331  T
Q  229 atctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
     |   || | |||||||||  | ||||||||||||||||||| |||||||| ||||||||||||| | ||||||||    
T  10571330 tttcatagaattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaataccaccggattttatt 10571255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 2276025 - 2276142
Alignment:
Q  184 actaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaat 283  Q
    |||||| |||||||||||||||||||  || || ||||||||||||||| || | |||||||||| | |||||||||  |||||  ||  |||| | |||    
T  2276025 actaaaaaatctcacaaaatccattatacaaaagaatccattaaaatctatagacttttgaatatcaatagacaattcataagtcatgagaaattttaat 2276124  T
Q  284 tgaataccactgaatttt 301  Q
    |||||||||  |||||||    
T  2276125 tgaataccaacgaatttt 2276142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 81507 - 81718
Alignment:
Q  89 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggaacattttacactaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  81507 tgaatttggaagagtattacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaa 81606  T
Q  189 acaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  || |||||||||||||||| |||||||||||||||||||    
T  81607 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattgaat 81706  T
Q  289 accactgaattt 300  Q
    ||||||| ||||    
T  81707 accactggattt 81718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 21192 - 21349
Alignment:
Q  143 tctcaaggctaggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagtttt 242  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 21291  T
Q  243 gaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattt 300  Q
    |||||    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21292 gaataccgatagacaatttttaagttatgcaaaatctcaattgaataccactggattt 21349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 21170 - 21208
Alignment:
Q  91 aatttggaagagtattacaaaatctcaaggctatgtgtg 129  Q
    |||||||||||||||||||||||||||||| || |||||    
T  21170 aatttggaagagtattacaaaatctcaaggttaggtgtg 21208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 304
Target Start/End: Original strand, 16303 - 16482
Alignment:
Q  109 aaaatctcaaggctatgtgtgggagacagaaaagtctcaaggcta--ggtgtgagattgttagtaggaacattttacactaaacaatctcacaaaatcca 206  Q
    ||||| ||||||||||||||| |||||| ||||||||||||| ||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  16303 aaaatttcaaggctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtacactttacactaaacaatctcacaaaatcca 16402  T
Q  207 ttactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaattgaataccactgaattttatt 304  Q
    |||||||||                  || | ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  16403 ttactcaca------------------tagaattttgaatactaatagacaatttttaagttatgcaaaatctcaattgaataccactggattttatt 16482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 1705 - 1813
Alignment:
Q  184 actaaacaatctcacaaaatccattactcacaacaatccattaaaatctgtaaagttttgaatattagtagacaatttttaagttgtgcaaaatctcaat 283  Q
    |||||| | ||||||||||||||||   || || |||||||||||||||| | | |||||||||  | |||||| ||| |||||||    |||||| |||    
T  1705 actaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatcttaat 1804  T
Q  284 tgaatacca 292  Q
    |||||||||    
T  1805 tgaatacca 1813  T

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