View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16088_low_5 (Length: 280)
Name: NF16088_low_5
Description: NF16088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16088_low_5 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 2766169 - 2766413
Alignment:
| Q |
20 |
acatatgcatccgggaaacggtttttctccgttggaatcaagtcttgtgcttctacaacattgacacgaacataccacaatctcggagcatgatagacct |
119 |
Q |
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| T |
2766169 |
acatatgcatccgggaaacggtttttctccgttggaatcaagtcttgtgcttctacaacattgacacgaacgtaccacaacctcggagcatgatagacct |
2766268 |
T |
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| Q |
120 |
ttgaacgtatcactgtcgtagtagcaggcgtgctgtccacaggagaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaat |
219 |
Q |
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| T |
2766269 |
ttgaacgtatcactgtcgtagtagcaggcgtgctgtccacaggagaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaat |
2766368 |
T |
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| Q |
220 |
ccaaacagctagcatcaactcacctttaactttctcccctttctt |
264 |
Q |
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| T |
2766369 |
ccaaacagctagcatcaactcacctttaactttctcccctttctt |
2766413 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 36811353 - 36811429
Alignment:
| Q |
170 |
gcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcaccttt |
246 |
Q |
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| T |
36811353 |
gcatctgagtgccacgcctcaggaaaagcttcatcagcttgagtacccatccaaacagccagcatcaactccccttt |
36811429 |
T |
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Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4368 - 4434
Alignment:
| Q |
164 |
gaagctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagcta |
230 |
Q |
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| T |
4368 |
gaagctgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgttcccatccaaacagcta |
4434 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 24951119 - 24951213
Alignment:
| Q |
167 |
gctgcatctgaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcacctttaactttctccccttt |
261 |
Q |
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| T |
24951119 |
gctgcatcagaatgccaagagtcaggaaatgcctcatctgcttgagttcccatccaaactgcaagcattaactctcccttgactttctcaccttt |
24951213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 11704293 - 11704363
Alignment:
| Q |
176 |
gaatgccatgcctcagaaaatgcttcatctgcttgagtaccaatccaaacagctagcatcaactcaccttt |
246 |
Q |
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| T |
11704293 |
gaatgccaagcatcaggaaaggcttcatcggcttgcgtaccaaaccatacagcaagcatcaactccccttt |
11704363 |
T |
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