View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16089_high_1 (Length: 652)
Name: NF16089_high_1
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_high_1 |
 | |
|
| [»] scaffold0337 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 14 - 636
Target Start/End: Complemental strand, 41731152 - 41730530
Alignment:
| Q |
14 |
attattctgtgcttatagctggtgctgttgttggtgctgatttgtaaatgtggaacataaactaaagcacgaaaacaatgcacggatgcaatcatagatg |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41731152 |
attattatgtgcttatagctggtgctgttgttggtgctgatttgtaaatgtggaacataaactaaagcacgaaaacaatgcacggatgcaatcatagatg |
41731053 |
T |
|
| Q |
114 |
tagatattactatgcattccttcgtgatctttctgaactcccacaggagatattttcactctgtttttgcattctaatgaattctaatattcctattttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41731052 |
tagatattactatgcattccttcgtgatctttctgaactcccacaggtgatattttcactctgtttttgcattctaatgaattctaatattcctattttc |
41730953 |
T |
|
| Q |
214 |
cagggcaggtcacttggatgatcatataagaacacacccttcgcatcaaaaatattactcacaaaagctaaaacgtctggtgagttttctcctttaaaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41730952 |
cagggcaggtcacttggatgatcatataagaacacacccttcgcatcaaaaatattactcacacaagctaaaacgtctggtgagttttctcctttaaaat |
41730853 |
T |
|
| Q |
314 |
gcattacttgaataaaggctaagttttcactttatatatatgaatgcattttaacgtgagtatctatcatatttgaagttaaatattgtattaatcttga |
413 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41730852 |
gcattacttgaataaaggctaaattttcactttatatatatgaatgcagtttaacgtgagtatctatcatatttgaagttaaatattgtattaatcttga |
41730753 |
T |
|
| Q |
414 |
ccatgaaatatttcatctaccaatacacaacaaaaataacaataatcaagattttccccactagatgtaagttaaacatttattaagttataaacaatgt |
513 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41730752 |
ccataaaatatttcatctaccaatacacaacaaaaataacaataatcaagattttccccactagatgtaagttaaacatttattaagttataaactatgt |
41730653 |
T |
|
| Q |
514 |
agtatataaacttaatgccttctttgttcgttccttaatttgctgcctttgttcatgttattgatactagcgtgcggatgggcatggtccgctttttcta |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41730652 |
agtatataaacttaatgccttctttgttcgttccttaatttgctgcctttgttcatgttattgatactagcgtgcggatgggcacggtccgctttttcta |
41730553 |
T |
|
| Q |
614 |
ttgcgctaacgcatatatataca |
636 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41730552 |
ttgcgctaacgcatatatataca |
41730530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 563
Target Start/End: Complemental strand, 53159418 - 53159378
Alignment:
| Q |
523 |
acttaatgccttctttgttcgttccttaatttgctgccttt |
563 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
53159418 |
acttaatgcattctttgttccttccttaatttgctgccttt |
53159378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 600 - 636
Target Start/End: Complemental strand, 6079903 - 6079867
Alignment:
| Q |
600 |
gtccgctttttctattgcgctaacgcatatatataca |
636 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6079903 |
gtccgctttttctactgcgctaacgcatatatctaca |
6079867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 600 - 632
Target Start/End: Complemental strand, 813 - 781
Alignment:
| Q |
600 |
gtccgctttttctattgcgctaacgcatatata |
632 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
813 |
gtccgctttttctactgcgctaacgcatatata |
781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 563
Target Start/End: Original strand, 45632560 - 45632600
Alignment:
| Q |
523 |
acttaatgccttctttgttcgttccttaatttgctgccttt |
563 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
45632560 |
acttaatgcattctttgttccttccttaatttactgccttt |
45632600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 600 - 632
Target Start/End: Complemental strand, 18670262 - 18670230
Alignment:
| Q |
600 |
gtccgctttttctattgcgctaacgcatatata |
632 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
18670262 |
gtccgctttttctactgcgctaacgcatatata |
18670230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University