View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16089_high_14 (Length: 234)
Name: NF16089_high_14
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_high_14 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 32264972 - 32264755
Alignment:
| Q |
15 |
tatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacacttacctgttccaaggtcaatcataatgtggagttggatttcatc |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264972 |
tatcaacgaactcttgtttgtctctgataacccaattaatcttattgctgttacacttacctgttccaaggtcaatcataatgtggagttggatttcatc |
32264873 |
T |
|
| Q |
115 |
ttctcgtgattgatcaatatattttcatcttttaaaatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatc |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
32264872 |
ttctcgtgattgatca--atattttcatcttttaaaatatgattaatttaaactataagaaaaatcaaatattatacagttacttgcaattatttgcatc |
32264775 |
T |
|
| Q |
215 |
ttataattttatctactatt |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32264774 |
ttataattttatctactatt |
32264755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 32255926 - 32255709
Alignment:
| Q |
15 |
tatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacactta-cctgttccaaggtcaatcataatgtggagttggatttcat |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32255926 |
tatcaacgaactcttgtttgtctctgagaacccaattaatcttattgctgttacacttaacctgttccaaggtcaatcataatgtggagttggatttcat |
32255827 |
T |
|
| Q |
114 |
cttctcgtgattgatcaat--atattttcatcttttaaaatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgc |
211 |
Q |
| |
|
||||| ||||||||| || ||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
32255826 |
cttcttgtgattgattgatcaatattttcatcttctaaaatattataaattgaaactataagagaaatcaaatattatatagttacttgcaattacttgc |
32255727 |
T |
|
| Q |
212 |
atcttataattttatcta |
229 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
32255726 |
atcatataattttatcta |
32255709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 32250442 - 32250388
Alignment:
| Q |
15 |
tatcaacgaactgttgtttgtctc-tgagagcccaattaatcttattgctgttac |
68 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||| ||||| |||||| |
|
|
| T |
32250442 |
tatcaacgaactcttgtttgtctcttcagagcccaattaatcatattgttgttac |
32250388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 23203591 - 23203510
Alignment:
| Q |
147 |
taaaatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatc-ttataattttatc |
227 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
23203591 |
taaaatatgaccaatttaaactataagagaaatcaaacattatatagttacttgcaattatttgcatctttataattttatc |
23203510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 23204894 - 23204840
Alignment:
| Q |
15 |
tatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttaca |
69 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
23204894 |
tatcaatgaactcttgttcgtctctgagagtccaattaatcatattgttgttaca |
23204840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 28719619 - 28719541
Alignment:
| Q |
15 |
tatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacacttacctgttccaaggtcaatcataatgtg |
99 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
28719619 |
tatcaatgaactcttgtttgtctctgagagcccaattaatcttattgttg------ttacctgttccaaggtcaatcataatgtg |
28719541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University