View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16089_high_4 (Length: 401)
Name: NF16089_high_4
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 41610829 - 41610438
Alignment:
| Q |
1 |
attctagtggattattatcttgtgaagaaaactaaattaagcattggagatttgtattcaagaaatccttatggtgcttactattacactaagggattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41610829 |
attctagtggattattatcttgtgaagaaaactaaattaagcattggagatttgtattcaagaaatcattatggtgcttactattacactaagggattta |
41610730 |
T |
|
| Q |
101 |
atgtggcagcaattgtggctcttgtttttggaatgttacctgtgattcctggtttattgcataaagttggaacgttaaaatcagtttcagaaacttttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41610729 |
atgtggcagcaattgtggctcttgtttttggaatgttacctgtgattcctggtttattgaataaagttggaacgttaaaatcagtttcagaaacttttgt |
41610630 |
T |
|
| Q |
201 |
tgttgtctataataatgcttggtttgttagcttcttttcagcaggattgttttattggattttgtcgagtttgataaagaaac---tggatgaatatgct |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41610629 |
tgttgtctataataatgcttggtttgttagcttcttttcagcaggattgttttattggattttgtcgagtttgataaagaaactggtggatgaatatgct |
41610530 |
T |
|
| Q |
298 |
agagacaactcttaacattctcgcaagtaaaaacatttgtaaattgc----atattgcgttatattattgttctaagtttaggagttggact |
385 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41610529 |
agagacaactcttaacattctcccaagtaaaaacatttgtaaattgcatatatattgcgttatattattgttcttagtttaggagttggact |
41610438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 27113083 - 27113273
Alignment:
| Q |
73 |
ggtgcttactattacactaagggatttaatgtggcagcaattgtggctcttgtttttggaatgttacctgtgattcctggtttattgcataaagttggaa |
172 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| ||||||||||||||| | ||| ||||||| |||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
27113083 |
ggtgcatactattatacaaaggggtttaatgtagcagcaattgtggctttagttgttggaattttacctgttgttcctggtttcttgcagaaagttggaa |
27113182 |
T |
|
| Q |
173 |
cgttaaaatcagtttcagaaacttttgttgttgtctataataatgcttggtttgttagcttcttttcagcaggattgttttattggatttt |
263 |
Q |
| |
|
|||| ||| || | | |||||||||| || || || |||||||||||| |||| |||||||||||||| || || ||||||||||| |
|
|
| T |
27113183 |
ttttaagttcaattcctaatgcttttgttgtggtatacaacaatgcttggtttattagtttcttttcagcagggttcttgtattggatttt |
27113273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 20625307 - 20625380
Alignment:
| Q |
45 |
tggagatttgtattcaagaaatccttatggtgcttactattacactaagggatttaatgtggcagcaattgtgg |
118 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
20625307 |
tggagatttgtattccaaaaatcattatggtgcttactattactctaagggatttaatgcggcagcaattgtgg |
20625380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University