View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16089_high_5 (Length: 401)

Name: NF16089_high_5
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16089_high_5
NF16089_high_5
[»] chr5 (5 HSPs)
chr5 (15-391)||(15214280-15214647)
chr5 (104-303)||(11204230-11204429)
chr5 (22-258)||(20677901-20678131)
chr5 (220-269)||(14555121-14555170)
chr5 (143-207)||(40935074-40935138)
[»] chr7 (5 HSPs)
chr7 (15-391)||(6200109-6200489)
chr7 (15-391)||(9067402-9067780)
chr7 (33-265)||(18308586-18308815)
chr7 (104-265)||(359861-360021)
chr7 (95-178)||(34866594-34866677)
[»] chr8 (6 HSPs)
chr8 (21-391)||(16079500-16079874)
chr8 (87-284)||(17534071-17534268)
chr8 (15-236)||(24116704-24116923)
chr8 (104-290)||(14652772-14652956)
chr8 (336-391)||(14653021-14653076)
chr8 (92-190)||(9907533-9907631)
[»] chr1 (1 HSPs)
chr1 (20-262)||(30508636-30508875)
[»] scaffold0044 (1 HSPs)
scaffold0044 (30-257)||(63682-63908)
[»] chr4 (3 HSPs)
chr4 (15-265)||(36541443-36541691)
chr4 (104-265)||(724064-724224)
chr4 (224-273)||(31815021-31815069)
[»] chr6 (3 HSPs)
chr6 (28-284)||(19006450-19006706)
chr6 (137-302)||(24067140-24067304)
chr6 (15-59)||(4280928-4280972)
[»] chr3 (3 HSPs)
chr3 (35-265)||(19272489-19272715)
chr3 (15-265)||(807026-807274)
chr3 (15-59)||(17595430-17595474)
[»] scaffold1956 (1 HSPs)
scaffold1956 (87-205)||(425-542)
[»] chr2 (1 HSPs)
chr2 (30-162)||(20855059-20855189)
[»] scaffold2108 (1 HSPs)
scaffold2108 (69-129)||(291-351)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 15214280 - 15214647
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||    
T  15214280 agttggaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatct---------attttgactaaacagttggttcagtttgc 15214370  T
Q  115 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  15214371 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaatactaaagcttttatcaccagaatccctcatacgtgt 15214470  T
Q  215 gacccttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatataaatataatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214471 gacccttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatataaatataatt 15214570  T
Q  315 ataaaattgtactccattctatgaaactgattcttccgtttagttatgttgttttctacttgttttccttcgcctat 391  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  15214571 ataaaactgtactcccttctatgaaactaattcttccgtttagttatgttgttttctacttgtcttccttcgcctat 15214647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 303
Target Start/End: Complemental strand, 11204429 - 11204230
Alignment:
Q  104 gttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatcc 203  Q
    |||||| | ||||||||||||||||| |  || ||||  |||||||| ||| ||||||||||||||||||||||||||||  ||||| |  |||||||||    
T  11204429 gttcagctcgcaaagtaaatggtacacaaaaggggttcccaggaaagagagatgggtcacttggacctcttaaataccaagactttccttgccagaatcc 11204330  T
Q  204 ctcatacgtgtgacc-cttaacaatactacacttcacttctgccac-ggggtacctagagtagttaaataattttcctaatgatagaatttactttacaa 301  Q
    |||||  ||||||||  |||| ||||||| |||| ||||||||||| |||||||||| ||  ||||||||||| ||||||| |||||||||  |||||||    
T  11204329 ctcat--gtgtgaccttttaataatactatactttacttctgccacgggggtacctaaagctgttaaataattgtcctaataatagaatttgttttacaa 11204232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 20677901 - 20678131
Alignment:
Q  22 actatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaa 121  Q
    |||| ||||| ||||||||||||| |||  ||  ||||||||  ||| |||||||||||| |||||| | ||||| ||  | |||||||||| |||||||    
T  20677901 actaagttttttgctcaactttatccttccat--gggtctggcactacttaatctattatttctattcttactaagcagatagttcagtttgtaaagtaa 20677998  T
Q  122 atggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgaccctt 221  Q
    |||||||||   || ||||  ||  |||| | ||||||||||||||| ||||||||||||||  ||||| || ||||||||||||  || ||||||| ||    
T  20677999 atggtacatgaaaggggttcccaaaaaagagtggtgggtcacttggagctcttaaataccaagactttcctcgccagaatccctc--acatgtgaccttt 20678096  T
Q  222 aac-aatactacacttcacttctgccacggggtaccta 258  Q
     || ||||||||||||   | |||||||||||||||||    
T  20678097 tacaaatactacactt---tactgccacggggtaccta 20678131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 14555170 - 14555121
Alignment:
Q  220 ttaacaatactacacttcacttctgccacggggtacctagagtagttaaa 269  Q
    |||||||||||||||||||||| |||||  || |||||||||||||||||    
T  14555170 ttaacaatactacacttcacttgtgccaatggatacctagagtagttaaa 14555121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 40935138 - 40935074
Alignment:
Q  143 caggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctca 207  Q
    |||||||| ||| |||||| | |||||||||||||||||||  ||||| || ||||| |||||||    
T  40935138 caggaaagagagatgggtcgcctggacctcttaaataccaagactttcctcgccagagtccctca 40935074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 6200489 - 6200109
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgc 114  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||    
T  6200489 agttggaactatgttttctactcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacagttagtttagttcgc 6200390  T
Q  115 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgt 214  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||| ||||| |||||||||  || |||||||||||||||  |||    
T  6200389 aaagtaaatggtacataggagaggtttccaggaaagagaggtgggtctcttgaacctctgaaatatcaaagcttttctcgccagaatccctcata--tgt 6200292  T
Q  215 gacccttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatataaatataatt 314  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  6200291 gacccttaacaaaactatacttcacttctgccacggggtacctagagtagttaaataatttttctagtgatagaatttactttacaatataaatataatt 6200192  T
Q  315 ataaaattgtactccattcta------tgaaactgattcttccgtttagttatgttgttttctacttgttttccttcgcctat 391  Q
    ||||||||||||||| |||||      ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||    
T  6200191 ataaaattgtactcccttctattagattgaaactaatttttccgtttagttatgttgttttctacttgtcttccttcgcctat 6200109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 9067780 - 9067402
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgc 114  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||| || || |||||||| ||    
T  9067780 agttggaactatgttttctgctcaactgtattcttctatatgggtctagtgctaattaatctattatgtctatttttactaagcagttagttcagttcgc 9067681  T
Q  115 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgt 214  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||  ||||||||||||||||||||| ||  ||||||||||||||  |||    
T  9067680 aaagtaaatggtacataggagaggtttccaggaaagagaagtgggtcacttgg--ctcttaaataccaaagctttcctcgtcagaatccctcata--tgt 9067585  T
Q  215 gacccttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatataaatataatt 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9067584 gacctttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatgtaaatataatt 9067485  T
Q  315 ataaaattgtactccattcta------tgaaactgattcttccgtttagttatgttgttttctacttgttttccttcgcctat 391  Q
    ||||||||||||||| |||||      ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||    
T  9067484 ataaaattgtactcccttctattagattgaaactaatttttccgtttagttatgttgttttctacttgtcttccttcgcctat 9067402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 18308815 - 18308586
Alignment:
Q  33 tgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggtacatag 132  Q
    ||||||| ||||||||| || ||||||||||||||| |||||| ||||| | |  ||| |||||||| || |||||||| ||||||||||||||||||      
T  18308815 tgctcaattttattcttctacatgggtctggtgcta-ttaatccattatttatgattttactaaacacttagttcagttcgcaaagtaaatggtacatga 18308717  T
Q  133 gagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgacc-cttaacaatacta 231  Q
     || ||||  || ||| | |||||||||||| ||||||| |||||||||||  ||||| || |||||||||||||||  |||||||  |||||||||| |    
T  18308716 aaggggttcccaagaaggagaggtgggtcacgtggaccttttaaataccaagactttcctcgccagaatccctcata--tgtgaccttttaacaatacaa 18308619  T
Q  232 cacttcacttctgccacggggtacctagagtagt 265  Q
    ||||| ||||||||||| ||||||||| ||||||    
T  18308618 cacttaacttctgccac-gggtacctaaagtagt 18308586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 359861 - 360021
Alignment:
Q  104 gttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatcc 203  Q
    ||||||||||||||||||||||||||| | || ||||  |||||||| ||||||||||| || ||||||||||||| ||| |||||| |  ||||||| |    
T  359861 gttcagtttgcaaagtaaatggtacatggaaggggttcccaggaaagagaggtgggtcatttagacctcttaaatatcaaggctttccttgccagaattc 359960  T
Q  204 ctcatacgtgtgacc-cttaacaatactacacttcacttctgccacggggtacctagagtagt 265  Q
    |||  || |||||||  ||||||||| || |||| ||||||||||||||||| ||||||||||    
T  359961 ctc--acatgtgaccttttaacaatattatactttacttctgccacggggtatctagagtagt 360021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 34866594 - 34866677
Alignment:
Q  95 aaacaattggttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaat 178  Q
    ||||| || ||||| || |||||||||||||||||    |||| ||| ||  |||| |||||||||||||||||||||||||||    
T  34866594 aaacagttagttcatttcgcaaagtaaatggtacacgaaagagatttccataaaagagaggtgggtcacttggacctcttaaat 34866677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 391
Target Start/End: Original strand, 16079500 - 16079874
Alignment:
Q  21 aactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagta 120  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||    
T  16079500 aactatgttttctgctcaactttaatcttatatatgggtctggtgctaattaatctattatgtctatttttactaaacatttagttcagttcgcaaagta 16079599  T
Q  121 aatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgaccct 220  Q
    ||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||  ||||||| |    
T  16079600 aatggtacataggagaggttcccagaaaagagaggtgggtcacttggacctcttaaataccaaagctttcttcgccagaatccctcgta--tgtgacctt 16079697  T
Q  221 taacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaatataaatataattataaaa 320  Q
    |||||||| |||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  16079698 taacaatattacacttcacttctgccaaggagtatctagagtagttaattaattttcctaatgatagaatttactttacaatataaatatttttataaaa 16079797  T
Q  321 ttgtactccattcta------tgaaactgattcttccgtttagttatgttgttttctacttgttttccttcgcctat 391  Q
    ||||||||| |||||      ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16079798 ttgtactcccttctattagattgaaactaattcttccgtttagttatgttgttttctacttgtcttccttcgcctat 16079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 284
Target Start/End: Original strand, 17534071 - 17534268
Alignment:
Q  87 ttttgactaaacaattggttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagc 186  Q
    |||| |||||||| || || ||||| |||| ||||| |||||||  ||| ||||   ||||||| ||||||||||||||||| | ||||||||||||  |    
T  17534071 tttttactaaacagttagtccagttcgcaatgtaaacggtacatgagaggggttcctaggaaagagaggtgggtcacttggatcacttaaataccaagac 17534170  T
Q  187 tttcatcaccagaatccctcatacgtgtgacc-cttaacaatactacacttcacttctgccacggggtacctagagtag-ttaaataattttcctaatga 284  Q
    |||  || |||||||| ||||||  |||||||  || |||||||| ||||| |||||||||| ||| |||||||||||| ||||| |||||||| |||||    
T  17534171 ttttctcgccagaatctctcata--tgtgaccttttgacaatacttcactttacttctgccaagggatacctagagtagtttaaacaattttccaaatga 17534268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 24116923 - 24116704
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgc 114  Q
    ||||||||||| || |||||||||| |||||||||  | |||||||||| |||| |||| | ||||| | | |||| ||||| ||| | ||||| ||  |    
T  24116923 agttagaactaagtcttctgctcaattttattcttccacatgggtctggcgcta-ttaagccattatttatgtttttactaatcaactagttcaattcac 24116825  T
Q  115 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgt 214  Q
    |||| ||||||||||    ||  |||  |||||||| |||||| ||||||||||||||||| |||||||  ||||| |   ||||||||||||||  |||    
T  24116824 aaagcaaatggtacacgaaaggagttcccaggaaagagaggtgagtcacttggacctcttagataccaagactttccttgtcagaatccctcata--tgt 24116727  T
Q  215 gacc-cttaacaatactacactt 236  Q
    ||||  |||||||||||||||||    
T  24116726 gaccttttaacaatactacactt 24116704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 14652772 - 14652956
Alignment:
Q  104 gttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatcc 203  Q
    |||||||||||||||||||||| |||||  | ||| || || ||||| ||||| ||||| ||||||| |||||||||||| ||| || ||  || |||||    
T  14652772 gttcagtttgcaaagtaaatggcacata-aaaagggttccatgaaagagaggtcggtcatttggaccacttaaataccaaggctatcctcgacaaaatcc 14652870  T
Q  204 ctcatacgtgtgac-ccttaacaatactacacttcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaat 290  Q
    ||| ||  || |||   ||| | ||||||| ||||||||   ||  |||||||||||||||||||||||||||  |||||||| ||||    
T  14652871 ctccta--tgcgactttttatcgatactactcttcacttgcaccttggggtacctagagtagttaaataatttctctaatgattgaat 14652956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 14653021 - 14653076
Alignment:
Q  336 tgaaactgattcttccgtttagttatgttgttttctacttgttttccttcgcctat 391  Q
    ||||||| | ||||||| |||||||||||||||||||||| | |||||||| ||||    
T  14653021 tgaaactaactcttccgcttagttatgttgttttctacttttcttccttcgactat 14653076  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 9907631 - 9907533
Alignment:
Q  92 actaaacaattggttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttc 190  Q
    |||||||| || |||||||| |||||||| ||||||||||| ||| |||  |||||||| ||| | | | ||||  ||| ||||||||||||| |||||    
T  9907631 actaaacagttagttcagttcgcaaagtatatggtacatagaagaagttcccaggaaagagagatagattacttaaaccacttaaataccaaaactttc 9907533  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 30508875 - 30508636
Alignment:
Q  20 gaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagt 119  Q
    |||||| || |||||||||| ||||||||| || |||||| ||| |||| |||||| ||||| | |  ||| || ||||| || |||||||| |||||||    
T  30508875 gaactaagtgttctgctcaattttattcttctacatgggt-tggcgcta-ttaatccattatttatgattttaccaaacagttagttcagttcgcaaagt 30508778  T
Q  120 aaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgacc- 218  Q
    |||||||||||   || ||||| |||||||  ||||||||||||||||||||||| ||||| ||  ||||| || |||||||||||||||  |||||||     
T  30508777 aaatggtacatgaaaggggtttccaggaaaaagaggtgggtcacttggacctcttcaatactaagactttcctcgccagaatccctcata--tgtgacct 30508680  T
Q  219 cttaacaatactacacttcacttctgccacggggtacctagagt 262  Q
     ||||||||||||||||| |||||||||||||||||||||||||    
T  30508679 tttaacaatactacactttacttctgccacggggtacctagagt 30508636  T

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Target: scaffold0044 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 63908 - 63682
Alignment:
Q  30 ttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggtaca 129  Q
    ||||||| || ||||||||| ||| ||||||||| |||| |||||  ||||| | | |||| ||||||||||| |||||||| |||||||||||||||||    
T  63908 ttctgctaaattttattcttctatgtgggtctggcgcta-ttaattcattatttatttttttactaaacaattagttcagttcgcaaagtaaatggtaca 63810  T
Q  130 taggagaggttttca-ggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgac-ccttaacaat 227  Q
    |   || |||||||| | |||| |||||||||||||||||| |||||||||||||  |||||  | ||| |||||||||||  ||| ||   ||||||||    
T  63809 tgaaaggggttttcatgaaaagggaggtgggtcacttggacttcttaaataccaagactttccacgccaaaatccctcata--tgtaactttttaacaat 63712  T
Q  228 actacacttcacttctgccacggggtacct 257  Q
    ||||||||| ||||||||||||||||||||    
T  63711 actacactttacttctgccacggggtacct 63682  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 36541443 - 36541691
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagttt-g 113  Q
    |||| |||||| || |||||||||| ||||||||| ||| ||||| ||| |||| |||||| ||||| | | |||| |||||||  || ||||||||| |    
T  36541443 agttggaactaagtcttctgctcaattttattcttctatgtgggtttggcgcta-ttaatccattatttatgtttttactaaacggttagttcagtttcg 36541541  T
Q  114 caaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtg 213  Q
    |||||||||||||||||   || ||||  |||||||| ||||||||||| |||||||||||||||| ||| | |||| ||  ||||||||||||||  ||    
T  36541542 caaagtaaatggtacatgaaaggggttcccaggaaagagaggtgggtcatttggacctcttaaata-caaggatttcttcgtcagaatccctcata--tg 36541638  T
Q  214 tgacc-cttaacaatactacacttcacttctgccacggggtacctagagtagt 265  Q
    |||||  ||||||||| ||||||| |||||||||||  |||||||| ||||||    
T  36541639 tgaccttttaacaatattacactttacttctgccactaggtacctaaagtagt 36541691  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 265
Target Start/End: Complemental strand, 724224 - 724064
Alignment:
Q  104 gttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatcc 203  Q
    ||||||||||||||||||||||||||  | || ||||  ||| |||| ||||||||||| || ||||||||||||||||| |||||| |  | ||||| |    
T  724224 gttcagtttgcaaagtaaatggtacacggaaggggttcccagtaaagagaggtgggtcatttagacctcttaaataccaaggctttccttgctagaattc 724125  T
Q  204 ctcatacgtgtgaccctt-aacaatactacacttcacttctgccacggggtacctagagtagt 265  Q
    ||||||  ||||||| || ||||||| || |||| ||||||||||||||||| ||||||||||    
T  724124 ctcata--tgtgacctttaaacaatattatactttacttctgccacggggtatctagagtagt 724064  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 31815069 - 31815021
Alignment:
Q  224 caatactacacttcacttctgccacggggtacctagagtagttaaataat 273  Q
    |||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  31815069 caatactatactttacttctgccacggg-tacctagagttgttaaataat 31815021  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 19006450 - 19006706
Alignment:
Q  28 ttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggta 127  Q
    |||| ||||||| ||||||||| ||   | |||||| |||| |||||||||||| | ||||||  || |  | || ||||| | | ||||||||||||||    
T  19006450 ttttttgctcaattttattcttctactggagtctggcgctatttaatctattatttttattttttcttagtatttagttcattctacaaagtaaatggta 19006549  T
Q  128 cataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgac-ccttaacaa 226  Q
    |||   |||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||||| || | ||||| | ||  || ||||||   |||||||    
T  19006550 catgaaagaggtttccaggaaagagaggtgggacacttggacctcttaaataacaaaactttcctcgcgagaatgcttc--acatgtgacattttaacaa 19006647  T
Q  227 tactacacttcacttctgccacggggtacctagagtag-ttaaataattttcctaatga 284  Q
    ||||||||||  ||| ||||||| |||||||||||||| ||||| ||||||||||||||    
T  19006648 tactacacttttcttttgccacgcggtacctagagtagtttaaacaattttcctaatga 19006706  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 137 - 302
Target Start/End: Complemental strand, 24067304 - 24067140
Alignment:
Q  137 ggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgaccctt-aacaatactacact 235  Q
    ||||| || ||||| ||||||||||||||||||| |||||||||||| |||||| ||| || ||||||||  ||  |  ||| || |||||||| |||||    
T  24067304 ggtttccatgaaagagaggtgggtcacttggaccacttaaataccaaggctttcctcaacaaaatccctctcacacg--accttttaacaataccacact 24067207  T
Q  236 tcacttctgccacggggtacctagagtagttaaataattttcctaatgatagaatttactttacaat 302  Q
    | ||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||  ||||||||    
T  24067206 ttacttctgccacggggtacctataatagttaaataattttcctaatgatggaaattgttttacaat 24067140  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 4280928 - 4280972
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggt 59  Q
    |||| |||||||||||| ||| |||||||||||||||||| ||||    
T  4280928 agttggaactatgttttatgcccaactttattcttttatacgggt 4280972  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 265
Target Start/End: Complemental strand, 19272715 - 19272489
Alignment:
Q  35 ctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggtacatagga 134  Q
    ||||| |||| |||| ||||||||| ||| |||| |||||| ||| ||| | |||  ||||||||||| |||||||| ||||||||||||||||||   |    
T  19272715 ctcaattttactcttctatatgggtttggcgcta-ttaatccattttatgttttt--actaaacaattagttcagttcgcaaagtaaatggtacatgaaa 19272619  T
Q  135 gaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgtgacc-cttaacaatactaca 233  Q
    | ||||  |||||||| ||||  ||||||||||||||||||||||  ||  | ||| || |||||||||||||||  | |||||  ||||||||||||||    
T  19272618 ggggttcccaggaaagagaggcaggtcacttggacctcttaaatattaagacattcctcgccagaatccctcata--tatgaccttttaacaatactaca 19272521  T
Q  234 cttcacttctgccacggggtacctagagtagt 265  Q
     || ||||||| |||||||| |||| ||||||    
T  19272520 gtttacttctgtcacggggtgcctaaagtagt 19272489  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 807274 - 807026
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgc 114  Q
    |||||| |||| || ||||||| |  ||||||||| ||  ||||||||  || |||||||| ||||| | | |||| |||||||| || ||||||||       
T  807274 agttaggactaagtcttctgctgatatttattcttctacgtgggtctgacgc-aattaatccattatttatgtttttactaaacagttagttcagttcaa 807176  T
Q  115 aaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagctttcatcaccagaatccctcatacgtgt 214  Q
    |||||||||| |||||   || || |  || ||||| ||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||||  |||    
T  807175 aaagtaaatgatacatgaaaggggatcccatgaaagagaggtgggtcacttgaacctcttaaataccaagactttcctcgccataatccctcata--tgt 807078  T
Q  215 gacc-cttaacaatactacacttcacttctgccacggggtacctagagtagt 265  Q
    ||||  ||||||||||| ||||| ||||||||||||||| |||||| |||||    
T  807077 gaccttttaacaatactccactttacttctgccacggggaacctagtgtagt 807026  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 17595474 - 17595430
Alignment:
Q  15 agttagaactatgttttctgctcaactttattcttttatatgggt 59  Q
    |||| |||||||||||| ||| |||||||||||||||||| ||||    
T  17595474 agttggaactatgttttatgcccaactttattcttttatacgggt 17595430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 425 - 542
Alignment:
Q  87 ttttgactaaacaattggttcagtttgcaaagtaaatggtacataggagaggttttcaggaaagtgaggtgggtcacttggacctcttaaataccaaagc 186  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||   | ||||| ||||||||| | | |||||||||||||||| || |||| |||  |    
T  425 tttttactaaacaattagttcagttcgcaaagtaaatggtacatgaaaaaggttatcaggaaagagtgatgggtcacttggacct-tttaatatcaagac 523  T
Q  187 tttcatcaccagaatccct 205  Q
    |||| ||||||||||||||    
T  524 tttcctcaccagaatccct 542  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 20855059 - 20855189
Alignment:
Q  30 ttctgctcaactttattcttttatatgggtctggtgctaattaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggtaca 129  Q
    |||||||||| |||||| || ||  ||||||| | |||| |||||| ||||| | | |||| |||||| | || |||||||| ||||| |||||||||||    
T  20855059 ttctgctcaattttattattctacgtgggtctagagcta-ttaatccattatttatgtttttactaaatagttagttcagttcgcaaaataaatggtaca 20855157  T
Q  130 taggagaggttt-tcaggaaagtgaggtgggtca 162  Q
    |  || |||||| ||||||||| |||||||||||    
T  20855158 t--gaaaggtttctcaggaaagagaggtgggtca 20855189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2108 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold2108
Description:

Target: scaffold2108; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 351 - 291
Alignment:
Q  69 attaatctattatatctattttgactaaacaattggttcagtttgcaaagtaaatggtaca 129  Q
    ||||||| ||||| | | |||| ||||||||||| ||||||||  ||||||||||||||||    
T  351 attaatccattatttatgtttttactaaacaattagttcagttcacaaagtaaatggtaca 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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