View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16089_high_6 (Length: 393)

Name: NF16089_high_6
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16089_high_6
NF16089_high_6
[»] chr2 (7 HSPs)
chr2 (35-370)||(14715659-14716006)
chr2 (231-338)||(19427312-19427416)
chr2 (304-347)||(21215377-21215420)
chr2 (304-365)||(864179-864240)
chr2 (298-365)||(5140043-5140110)
chr2 (311-365)||(8011931-8011985)
chr2 (302-355)||(14960725-14960778)
[»] chr8 (4 HSPs)
chr8 (266-365)||(38695690-38695789)
chr8 (298-368)||(33440577-33440647)
chr8 (298-347)||(31703823-31703872)
chr8 (304-368)||(14022032-14022096)
[»] chr3 (6 HSPs)
chr3 (231-318)||(52951385-52951471)
chr3 (282-362)||(42926173-42926253)
chr3 (298-365)||(54187002-54187069)
chr3 (297-365)||(24748948-24749016)
chr3 (231-288)||(52951475-52951531)
chr3 (297-365)||(27243119-27243187)
[»] scaffold0147 (1 HSPs)
scaffold0147 (277-364)||(28350-28437)
[»] chr7 (3 HSPs)
chr7 (298-365)||(557450-557517)
chr7 (314-364)||(44853246-44853296)
chr7 (304-365)||(41258245-41258306)
[»] chr5 (4 HSPs)
chr5 (272-352)||(868218-868298)
chr5 (298-365)||(32153766-32153833)
chr5 (298-365)||(30892148-30892215)
chr5 (297-370)||(13456198-13456271)
[»] chr4 (3 HSPs)
chr4 (298-355)||(50251526-50251583)
chr4 (298-365)||(43480283-43480350)
chr4 (297-365)||(16178657-16178725)
[»] scaffold0922 (1 HSPs)
scaffold0922 (298-362)||(709-773)
[»] chr1 (3 HSPs)
chr1 (298-362)||(932023-932087)
chr1 (265-321)||(39627473-39627529)
chr1 (330-358)||(32748345-32748373)
[»] scaffold0190 (1 HSPs)
scaffold0190 (266-321)||(2417-2472)
[»] chr6 (3 HSPs)
chr6 (298-365)||(7447639-7447706)
chr6 (304-365)||(32439517-32439578)
chr6 (296-340)||(7857186-7857230)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 35 - 370
Target Start/End: Complemental strand, 14716006 - 14715659
Alignment:
Q  35 tcaacatttaaccaacaaataaaactcaaattca-----------tctcttcaacatcatgaattcatgtctttcacataaaatgtacaattgtcaaaat 123  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14716006 tcaacatttaaccaacaaataaaactcaaattcaacatcaattcatctcttcaacatcatgaattcatggctttcacataaaatgtacaattgtcaaaat 14715907  T
Q  124 tgtgacnnnnnnnnnataatacacaagagggatnnnnnnngatcacgttagttaactacaactatgaaaaggtaaaatcta---aaaaagaaattaaaga 220  Q
    ||||||         ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||    
T  14715906 tgtgactttttttt-ataatacacaagagggataaaaaa-gatcacgttagttaactacaactatgaaaaggtaaaatctattaaaaaaaaaattaaaga 14715809  T
Q  221 agaaggatgacaacactctctttttaacattctctcttagcaccaactctatcatcggatgaaatcaatgaggactccaccattttatgtggg-atccat 319  Q
    |||||| | ||||||||||||||||||||||||||   |||||  |||||||||| ||||||||||||||||||||||||||||||||||||| |||| |    
T  14715808 agaaggctaacaacactctctttttaacattctctac-agcactcactctatcattggatgaaatcaatgaggactccaccattttatgtggggatccgt 14715710  T
Q  320 ttttaaagtgtgggatccacattaatttcatccaatgagagagtgaatgct 370  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14715709 tttcaaagtgtgggatccacattaatttcatccaatgagagagtgaatgct 14715659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 19427416 - 19427312
Alignment:
Q  231 caacactctctttttaacattctctcttagcaccaactctatcatcggatgaaatcaatgaggactccaccattttatgtgggatccatttttaaagtgt 330  Q
    ||||||||||||||||||| |||||   |||||  |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  19427416 caacactctctttttaacactctct---agcactcactctatcattggatgaaatcaatgtggactccaccactttatgtgggatccattttcaaagtgt 19427320  T
Q  331 gggatcca 338  Q
    ||||||||    
T  19427319 gggatcca 19427312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 21215420 - 21215377
Alignment:
Q  304 tttatgtgggatccatttttaaagtgtgggatccacattaattt 347  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  21215420 tttatgtgggatccattttcaaagtgtgggattcacattaattt 21215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 864179 - 864240
Alignment:
Q  304 tttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||||||||||||||| ||| |||||| | |||||| ||||||| ||||| |||||||||    
T  864179 tttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtga 864240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 5140043 - 5140110
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| ||||||||||||||||||| || |||||| | |||||| |||||||  |||| |||||||||    
T  5140043 caccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagtga 5140110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 8011931 - 8011985
Alignment:
Q  311 gggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||||| || |||||||||  ||| |||||||||||||||||||||| |||||    
T  8011931 gggatccaattctaaagtgtgaaatctacattaatttcatccaatgagaaagtga 8011985  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 14960725 - 14960778
Alignment:
Q  302 attttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaat 355  Q
    |||||||||| |||||||||| || |||| | |||||||| |||||||||||||    
T  14960725 attttatgtgagatccattttcaatgtgtagtatccacataaatttcatccaat 14960778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 38695789 - 38695690
Alignment:
Q  266 actctatcatcggatgaaatcaatgaggactccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||||||| |||||||||||||| |||||| | || || ||| ||||||||||| |||||| || ||||||||||||||||||||||| |||||||||    
T  38695789 actctatcattggatgaaatcaatgtggactctatcacttcatgcgggatccatttctaaagtatgagatccacattaatttcatccaataagagagtga 38695690  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 33440577 - 33440647
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtgaatg 368  Q
    ||||| ||||||||||||||||||  || |||||| | |||||| | ||||| ||||| ||||||||||||    
T  33440577 caccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatg 33440647  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 31703823 - 31703872
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaattt 347  Q
    ||||| ||||||||||||||||||  ||||||||  ||||||||||||||    
T  31703823 caccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 14022096 - 14022032
Alignment:
Q  304 tttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtgaatg 368  Q
    |||||||||||||| |||  ||||| ||||| | |||||||||||| | ||| ||||||||||||    
T  14022096 tttatgtgggatccgtttccaaagtttgggacctacattaatttcaccgaataagagagtgaatg 14022032  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 52951385 - 52951471
Alignment:
Q  231 caacactctctttttaacattctctcttagcaccaactctatcatcggatgaaatcaatgaggactccaccattttatgtgggatcca 318  Q
    ||||||||||||||||||| ||||||  |  ||  |||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  52951385 caacactctctttttaacactctctcaaat-actcactctatcattggatgaaatcaatgtggactccaccactttatgtgggatcca 52951471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 42926253 - 42926173
Alignment:
Q  282 aaatcaatgaggactccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagag 362  Q
    ||||||||| |||  ||||||||||||||||||  |||||  ||||||||||||||||||| ||||   ||||||||||||    
T  42926253 aaatcaatgtggatcccaccattttatgtgggactcatttccaaagtgtgggatccacattgattttgcccaatgagagag 42926173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 54187002 - 54187069
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||||||||||||||||||||| ||| |||||| | |||||| || |||| ||||| |||||||||    
T  54187002 caccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataagagagtga 54187069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 24749016 - 24748948
Alignment:
Q  297 ccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||||||||||||||| ||||||| |||||||| ||  | ||||| |||||||||||| | |||||||    
T  24749016 ccaccattttatgtgggttccatttctaaagtgtaggtcctacattgatttcatccaataaaagagtga 24748948  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 52951531 - 52951475
Alignment:
Q  231 caacactctctttttaacattctctcttagcaccaactctatcatcggatgaaatcaa 288  Q
    ||||||||||||||||||| |||||| ||||||  ||||| |||| ||||||||||||    
T  52951531 caacactctctttttaacactctctc-tagcactcactctctcattggatgaaatcaa 52951475  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 27243119 - 27243187
Alignment:
Q  297 ccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||| |||||||||| |||||||  |||||||  || ||||||| |||| | |||||||||||||||    
T  27243119 ccaccactttatgtgggttccatttccaaagtgtatgacccacattgatttaacccaatgagagagtga 27243187  T

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Target: scaffold0147 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 28350 - 28437
Alignment:
Q  277 ggatgaaatcaatgaggactccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtg 364  Q
    |||||||||||||| ||   ||| || ||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||| ||||||||    
T  28350 ggatgaaatcaatgtgggtcccatcaatttatgtgggacccattttcaaagtgtgggacccacattgatttcacccaataagagagtg 28437  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 557450 - 557517
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| |||||||||||||||||||||| |||||  | |||||| ||||||||||||| |||||||||    
T  557450 caccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagtga 557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 44853246 - 44853296
Alignment:
Q  314 atccatttttaaagtgtgggatccacattaatttcatccaatgagagagtg 364  Q
    ||||||||| |||||||| |||||||| |||||||||| ||||||||||||    
T  44853246 atccattttcaaagtgtgtgatccacagtaatttcatctaatgagagagtg 44853296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 41258245 - 41258306
Alignment:
Q  304 tttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| |||||||||||   ||||| |||||||||||||||||||||| ||||| |||||||    
T  41258245 tttatttgggatccattcacaaagtttgggatccacattaatttcatcaaatgaaagagtga 41258306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 868298 - 868218
Alignment:
Q  272 tcatcggatgaaatcaatgaggactccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatcc 352  Q
    |||| ||| |||||||||| |||   ||||| |||||||||||| ||||| |||| ||| |||||||||||||||||||||    
T  868298 tcattggaggaaatcaatgtggatgtcaccactttatgtgggattcatttctaaattgtaggatccacattaatttcatcc 868218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 32153766 - 32153833
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||   ||||| ||||| |||||||||    
T  32153766 caccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagtga 32153833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 30892215 - 30892148
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||||||||||||||||||||| ||| |||||| | |||||| || |||| | ||| |||||||||    
T  30892215 caccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagtga 30892148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 13456271 - 13456198
Alignment:
Q  297 ccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtgaatgct 370  Q
    ||||||||||||||||| |||||||| ||||||| ||| | ||||| |||||| | ||| | ||||||| ||||    
T  13456271 ccaccattttatgtgggttccattttcaaagtgtaggacctacattgatttcacctaataaaagagtgagtgct 13456198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 50251526 - 50251583
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaat 355  Q
    |||||||||| |||||||||||||| || |||||| |||||||| ||||||| |||||    
T  50251526 caccattttacgtgggatccattttcaacgtgtggtatccacatgaatttcacccaat 50251583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 43480350 - 43480283
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| ||||||||||||||||||| || |||||| | |||||| ||||||| ||||| ||| |||||    
T  43480350 caccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcagccaataagaaagtga 43480283  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 16178657 - 16178725
Alignment:
Q  297 ccaccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    |||||| |||||||||| |||||||  ||||||| || || ||||| |||||||||||| | |||||||    
T  16178657 ccaccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatccaataaaagagtga 16178725  T

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Target: scaffold0922 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 773 - 709
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagag 362  Q
    ||||| ||||||||||||||||||| || |||||| |||||||| |||||||  |||| ||||||    
T  773 caccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 932087 - 932023
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagag 362  Q
    ||||| ||||||||||||||||||  || |||||| |||||||| ||||||| ||||| ||||||    
T  932087 caccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcacccaattagagag 932023  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 39627529 - 39627473
Alignment:
Q  265 aactctatcatcggatgaaatcaatgaggactccaccattttatgtgggatccattt 321  Q
    ||||||||||| |||||||||||||| ||| || |||| ||||||||||||| ||||    
T  39627529 aactctatcattggatgaaatcaatgtggattctaccactttatgtgggatctattt 39627473  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 358
Target Start/End: Complemental strand, 32748373 - 32748345
Alignment:
Q  330 tgggatccacattaatttcatccaatgag 358  Q
    |||||||||||||||||||||||||||||    
T  32748373 tgggatccacattaatttcatccaatgag 32748345  T

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Target: scaffold0190 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 2472 - 2417
Alignment:
Q  266 actctatcatcggatgaaatcaatgaggactccaccattttatgtgggatccattt 321  Q
    ||||||| || ||| |||||||||| ||||| ||||| ||||||||||||||||||    
T  2472 actctattattggaggaaatcaatgtggactacaccactttatgtgggatccattt 2417  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 7447639 - 7447706
Alignment:
Q  298 caccattttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||| |||||||||||||||||| ||| |||||| | |||||| ||||||| ||||  |||||||||    
T  7447639 caccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagtga 7447706  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 32439578 - 32439517
Alignment:
Q  304 tttatgtgggatccatttttaaagtgtgggatccacattaatttcatccaatgagagagtga 365  Q
    ||||||||||||||||||  || |||||| | |||||| ||||||| ||||| |||||||||    
T  32439578 tttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtga 32439517  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 7857230 - 7857186
Alignment:
Q  296 tccaccattttatgtgggatccatttttaaagtgtgggatccaca 340  Q
    ||||||||||||||||  || |||||||||||||||| |||||||    
T  7857230 tccaccattttatgtgaaattcatttttaaagtgtggtatccaca 7857186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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