View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16089_low_10 (Length: 365)
Name: NF16089_low_10
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 32264758 - 32264413
Alignment:
| Q |
14 |
tattatttgtgtcacaataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttaaaaacaagttgtagat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32264758 |
tattatttgtgtcacaataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttataaacaagttgtagat |
32264659 |
T |
|
| Q |
114 |
tcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32264658 |
tcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaac |
32264559 |
T |
|
| Q |
214 |
tagtgcgcatgaaaaccctgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgcagtgt |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32264558 |
tagtgcgcatgaaaacctcgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgtagtgt |
32264459 |
T |
|
| Q |
314 |
cgcaacatctttgatattgtgtactcattatatatgtgtctgtgct |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32264458 |
cgcaacatctttgatattgtgtactcattatatatgcgtctgtgct |
32264413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 307
Target Start/End: Complemental strand, 32255577 - 32255402
Alignment:
| Q |
132 |
cccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccc |
231 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||| ||||||||||||| |||||| |||| ||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
32255577 |
cccttattgttggtcttagtttaggggaaagtttgtgaagctcacggaacagaatttttatgtcaagtgtgaggcacccaactagtgcccatgaaaaccc |
32255478 |
T |
|
| Q |
232 |
tgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccg |
307 |
Q |
| |
|
||||| ||||| ||| | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
32255477 |
cgccctaatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccagaacaatccaaccg |
32255402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 32255711 - 32255624
Alignment:
| Q |
10 |
ctattattatttgtgtcacaa-taatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggtta |
97 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32255711 |
ctattactatttgtatcacaaataatcattggaatactttttcaatcaaaata-aaaataatcatagaaaaagaattcaatacaggtta |
32255624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 32249601 - 32249544
Alignment:
| Q |
284 |
tgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcat |
341 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
32249601 |
tgataagccagaacaatccaatcatagcaccgcaacatctttgatattgtgtactcat |
32249544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 23203314 - 23203167
Alignment:
| Q |
133 |
ccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgca-tgaaaaccc |
231 |
Q |
| |
|
|||||||| |||||| ||||| |||||| |||||| ||||||||||||| ||||||||| |||| ||| ||||| |||||||||||| ||||||| | |
|
|
| T |
23203314 |
ccttaatgctggtctatgtttaggggaaagtttgtgaagctcacggaacatgtttttaatgtcaagcgcgaagcgctaaactagtgcgcattgaaaactc |
23203215 |
T |
|
| Q |
232 |
tgccc------tgatgactgcacggagcactataatgtgttgagcccc |
273 |
Q |
| |
|
|||| | ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23203214 |
cgccctaatattaatgaccgcacggagcactgtaatgtgttgagcccc |
23203167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University