View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16089_low_12 (Length: 296)
Name: NF16089_low_12
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 43246544 - 43246813
Alignment:
| Q |
1 |
ttagaagatgttgctgatgatagtgtaatagc---caaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcattgtttttgtgtttaaag |
97 |
Q |
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| T |
43246544 |
ttagaagatgttgctgatgatagtgtaatagcgcccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcattgtttttgtgtttaaag |
43246643 |
T |
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| Q |
98 |
ctatgtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgagaaggataagaagaaatggcaggtatttata |
197 |
Q |
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| T |
43246644 |
ctatgtatgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgagaaggataagaagaaatggtaggtatttata |
43246743 |
T |
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| Q |
198 |
gaagagagggaggtctatggataatatcataaatttttcatatagaatgcaatttcatgcatgggataat |
267 |
Q |
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| T |
43246744 |
gaagagagggaggtcgatggataatatcataaatttttcatatagaatgcaatttcatgcatgggataat |
43246813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 8541238 - 8541395
Alignment:
| Q |
4 |
gaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcattgtttttgtgtttaaagctatgt |
103 |
Q |
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| T |
8541238 |
gaagatgttgctgatgatagtgtaatggccaaaaccattagcaaggccagaagaaaaagggtattgatgaacttcat--tttttgtgtttaaagc----t |
8541331 |
T |
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| Q |
104 |
atgagaggtaaaacaaagttggatatgagtaaaagtagtacttgttggatatgttttgaatgagaag |
170 |
Q |
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| T |
8541332 |
aggagaggtaaaagaaagttggaaatgagtaa---taatacttggtagatatgttttgaatgagaag |
8541395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 8551734 - 8551811
Alignment:
| Q |
4 |
gaagatgttgctgatgatagtgtaatagccaaagccattagcaaggtcacaaggaaaagggtcttgatgaacttcatt |
81 |
Q |
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| T |
8551734 |
gaagatgttgctgatgatagtgtaatggccaaagccattagcaaggccagaagaaaaagggtattgatgaacttcatt |
8551811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 8532967 - 8533048
Alignment:
| Q |
3 |
agaagatgttgctgatgatagtgtaatagccaaagccat---tagcaaggtcacaaggaaaagggtcttgatgaacttcatt |
81 |
Q |
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| T |
8532967 |
agaagatgatgctgatgatggtgtaacggtcaaagccataattaacaaggtcacaaggaaaagagtcttcatggacttcatt |
8533048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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